HL_7D80_110

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCGAGUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_110 not in the Motif Atlas

Homologous match to HL_1IL2_003

Geometric discrepancy: 0.3089

The information below is about HL_1IL2_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

7D80|1|y|G|53
7D80|1|y|C|56
7D80|1|y|G|57
7D80|1|y|A|58
7D80|1|y|G|59
7D80|1|y|U|60
7D80|1|y|C|61

Current chains

Chain y

P-site tRNA

Nearby chains

Chain e

50S ribosomal protein L5

Chain l

50S ribosomal protein L16