HL_7D80_118

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGGUUAAUAUUCCU

Length

14 nucleotides

Bulged bases

7D80|1|A|U|1396, 7D80|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|A|1387
7D80|1|A|G|1388
7D80|1|A|G|1389
7D80|1|A|U|1390
7D80|1|A|U|1391
7D80|1|A|A|1392
7D80|1|A|A|1393
7D80|1|A|U|1394
7D80|1|A|A|1395
7D80|1|A|U|1396
7D80|1|A|U|1397
7D80|1|A|C|1398
7D80|1|A|C|1399
7D80|1|A|U|1400

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

Trigger factor

Chain W

50S ribosomal protein L23