HL_7D80_119

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

7D80|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_119 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2979

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7D80|1|A|U|1629
7D80|1|A|A|1630
7D80|1|A|G|1631
7D80|1|A|A|1632
7D80|1|A|G|1633
7D80|1|A|A|1634
7D80|1|A|A|1635
7D80|1|A|U|1636
7D80|1|A|A|1637

Current chains

Chain A

23S ribosomal RNA

Nearby chains