HL_7D80_120

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUCGGGUAAGUUCCGAC

Length

17 nucleotides

Bulged bases

7D80|1|A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|G|1945
7D80|1|A|U|1946
7D80|1|A|C|1947
7D80|1|A|G|1948
7D80|1|A|G|1949
7D80|1|A|G|1950
7D80|1|A|U|1951
7D80|1|A|A|1952
7D80|1|A|A|1953
7D80|1|A|G|1954
7D80|1|A|U|1955
7D80|1|A|U|1956
7D80|1|A|C|1957
7D80|1|A|C|1958
7D80|1|A|G|1959
7D80|1|A|A|1960
7D80|1|A|C|1961

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA

Chain j

50S ribosomal protein L14