HL_7D80_125

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUCUGAGAGGAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|B|G|293
7D80|1|B|U|294
7D80|1|B|C|295
7D80|1|B|U|296
7D80|1|B|G|297
7D80|1|B|A|298
7D80|1|B|G|299
7D80|1|B|A|300
7D80|1|B|G|301
7D80|1|B|G|302
7D80|1|B|A|303
7D80|1|B|U|304

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4

Chain F

30S ribosomal protein S5

Chain M

30S ribosomal protein S12

Chain R

30S ribosomal protein S17