HL_7D80_129

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGGGACACGUGGUAUCCUG

Length

19 nucleotides

Bulged bases

7D80|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|378
7D80|1|A|G|379
7D80|1|A|G|380
7D80|1|A|G|381
7D80|1|A|A|382
7D80|1|A|C|383
7D80|1|A|A|384
7D80|1|A|C|385
7D80|1|A|G|386
7D80|1|A|U|387
7D80|1|A|G|388
7D80|1|A|G|389
7D80|1|A|U|390
7D80|1|A|A|391
7D80|1|A|U|392
7D80|1|A|C|393
7D80|1|A|C|394
7D80|1|A|U|395
7D80|1|A|G|396

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain v

50S ribosomal protein L28