HL_7DUG_009

3D structure

PDB id

7DUG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

7DUG|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUG_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1192

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

7DUG|1|A|C|342
7DUG|1|A|U|343
7DUG|1|A|A|344
7DUG|1|A|C|345
7DUG|1|A|G|346
7DUG|1|A|G|347

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains