HL_7DUK_006
3D structure
- PDB id
- 7DUK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 7DUK|1|A|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7DUK_006 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.08
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_36455.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7DUK|1|A|G|259
7DUK|1|A|G|260
7DUK|1|A|U|261
7DUK|1|A|A|262
7DUK|1|A|A|263
7DUK|1|A|U|264
7DUK|1|A|G|265
7DUK|1|A|G|266
7DUK|1|A|C|267
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain Q
- 30S ribosomal protein S17
- Chain T
- 30S ribosomal protein S20
Coloring options: