HL_7DUL_006

3D structure

PDB id

7DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

7DUL|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUL_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0901

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7DUL|1|A|G|259
7DUL|1|A|G|260
7DUL|1|A|U|261
7DUL|1|A|A|262
7DUL|1|A|A|263
7DUL|1|A|U|264
7DUL|1|A|G|265
7DUL|1|A|G|266
7DUL|1|A|C|267

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20