3D structure

PDB id
7DUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
GAA(M2G)(5MC)AACGC
Length
10 nucleotides
Bulged bases
7DUL|1|A|A|968, 7DUL|1|A|G|971
QA status
Modified nucleotides: M2G, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7DUL_021 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.14
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_97521.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7DUL|1|A|G|963
7DUL|1|A|A|964
7DUL|1|A|A|965
7DUL|1|A|M2G|966
7DUL|1|A|5MC|967
7DUL|1|A|A|968
7DUL|1|A|A|969
7DUL|1|A|C|970
7DUL|1|A|G|971
7DUL|1|A|C|972

Current chains

Chain A
30S Ribosomal RNA rRNA

Nearby chains

Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain W
RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')

Coloring options:


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