HL_7DUL_033
3D structure
- PDB id
- 7DUL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7DUL_033 not in the Motif Atlas
- Geometric match to HL_7U2I_104
- Geometric discrepancy: 0.1552
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7DUL|1|W|A|31
7DUL|1|W|U|32
7DUL|1|W|U|33
7DUL|1|W|G|34
7DUL|1|W|A|35
7DUL|1|W|A|36
7DUL|1|W|A|37
7DUL|1|W|A|38
7DUL|1|W|U|39
Current chains
- Chain W
- RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S ribosomal protein S12
- Chain Y
- RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')
Coloring options: