HL_7DUL_034

3D structure

PDB id

7DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CAGCC(7MG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUL_034 not in the Motif Atlas

Homologous match to HL_5J7L_205

Geometric discrepancy: 0.1125

The information below is about HL_5J7L_205

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7DUL|1|A|C|522
7DUL|1|A|A|523
7DUL|1|A|G|524
7DUL|1|A|C|525
7DUL|1|A|C|526
7DUL|1|A|7MG|527

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')