HL_7EOG_001

3D structure

PDB id

7EOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pepper aptamer in complex with HBC, iridium hexammine soak

Experimental method

X-RAY DIFFRACTION

Resolution

1.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7EOG|1|A|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7EOG_001 not in the Motif Atlas

Geometric match to HL_4PDB_001

Geometric discrepancy: 0.0903

The information below is about HL_4PDB_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7EOG|1|A|C|19
7EOG|1|A|U|20
7EOG|1|A|U|21
7EOG|1|A|C|22
7EOG|1|A|G|23
7EOG|1|A|G|24

Current chains

Chain A

Pepper (49-MER)

Nearby chains