HL_7F0D_035

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

7F0D|1|A|C|1456, 7F0D|1|A|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_035 not in the Motif Atlas

Geometric match to HL_4V9F_035

Geometric discrepancy: 0.1207

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7F0D|1|A|G|1455
7F0D|1|A|C|1456
7F0D|1|A|C|1457
7F0D|1|A|A|1458
7F0D|1|A|G|1459
7F0D|1|A|U|1460
7F0D|1|A|C|1461

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22