7F0D Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7F0D_075 | 1/A/59:68 | Pseudoknot with intercalation | homologous HL_4WF9_067 HL_17803.1 | |
| HL_7F0D_001 | 1/A/87:96 | Pseudoknot geometry | homologous HL_8VTW_002 NA | |
| HL_7F0D_002 | 1/A/123:128 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_7F0D_003 | 1/A/137:144 | GNRA wlth tandem sheared | geometric HL_4WF9_004 HL_98423.1 | |
| HL_7F0D_004 | 1/A/160:170 | No text annotation | geometric HL_5J7L_138 NA | |
| HL_7F0D_005 | 1/A/196:203 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_7F0D_006 | 1/A/227:232 | No text annotation | geometric HL_6CZR_075 NA | |
| HL_7F0D_007 | 1/A/248:254 | No text annotation | geometric HL_4WF9_008 HL_76371.1 | |
| HL_7F0D_010 | 1/A/388:395 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 NA | |
| HL_7F0D_011 | 1/A/402:406 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7F0D_012 | 1/A/410:418 | T-loop with unstacked turn | geometric HL_5J7L_144 NA | |
| HL_7F0D_013 | 1/A/470:482 | No text annotation | homologous HL_4WF9_013 HL_69139.1 | |
| HL_7F0D_014 | 1/A/499:506 | Pseudoknot geometry | geometric HL_4WF9_014 HL_30680.4 | |
| HL_7F0D_015 | 1/A/551:556 | GNRA | geometric HL_3G9C_008 NA | |
| HL_7F0D_016 | 1/A/576:581 | GNRA | geometric HL_5XTM_001 NA | |
| HL_7F0D_017 | 1/A/638:644 | No text annotation | ||
| HL_7F0D_018 | 1/A/668:677 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.1 | |
| HL_7F0D_019 | 1/A/715:720 | No text annotation | geometric HL_2Y9H_003 HL_75660.6 | |
| HL_7F0D_020 | 1/A/733:738 | GNRA | geometric HL_7A0S_020 HL_34789.1 | |
| HL_7F0D_021 | 1/A/745:751 | GNRA | homologous HL_4WF9_021 HL_34789.1 | |
| HL_7F0D_024 | 1/A/873:882 | No text annotation | geometric HL_7A0S_022 HL_50204.1 | |
| HL_7F0D_025 | 1/A/908:914 | UNCG variation | geometric HL_2NUE_001 NA | |
| HL_7F0D_026 | 1/A/955:960 | No text annotation | geometric HL_7RQB_025 NA | |
| HL_7F0D_028 | 1/A/1083:1090 | GNRA | geometric HL_7RQB_027 NA | |
| HL_7F0D_029 | 1/A/1107:1114 | No text annotation | geometric HL_4WF9_028 HL_47171.1 | |
| HL_7F0D_030 | 1/A/1193:1203 | No text annotation | ||
| HL_7F0D_033 | 1/A/1353:1358 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_7F0D_034 | 1/A/1412:1420 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_165 NA | |
| HL_7F0D_035 | 1/A/1455:1461 | Pseudoknot geometry with 3' bulge | geometric HL_4V9F_035 HL_49081.1 | |
| HL_7F0D_036 | 1/A/1494:1499 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_7F0D_037 | 1/A/1520:1529 | No text annotation | geometric HL_4WF9_035 HL_77449.1 | |
| HL_7F0D_038 | 1/A/1600:1605 | No text annotation | ||
| HL_7F0D_039 | 1/A/1688:1699 | No text annotation | ||
| HL_7F0D_040 | 1/A/1729:1735 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 NA | |
| HL_7F0D_041 | 1/A/1770:1778 | No text annotation | ||
| HL_7F0D_042 | 1/A/1802:1805 | Mini UNCG | geometric HL_7A0S_039 HL_90436.1 | |
| HL_7F0D_043 | 1/A/1847:1854 | No text annotation | geometric HL_7RQB_040 NA | |
| HL_7F0D_044 | 1/A/1865:1871 | GNRA | geometric HL_5J7L_174 NA | |
| HL_7F0D_045 | 1/A/1926:1931 | UNCG | geometric HL_4JF2_003 NA | |
| HL_7F0D_047 | 1/A/1986:1990 | No text annotation | geometric HL_4V9F_046 HL_80709.4 | |
| HL_7F0D_048 | 1/A/2011:2021 | No text annotation | geometric HL_5J7L_178 NA | |
| HL_7F0D_049 | 1/A/2040:2045 | GNRA | geometric HL_3IWN_001 HL_34789.1 | |
| HL_7F0D_077 | 1/A/2144:2162 | No text annotation | ||
| HL_7F0D_051 | 1/A/2148:2159 | No text annotation | ||
| HL_7F0D_052 | 1/A/2187:2195 | No text annotation | geometric HL_5J7L_182 NA | |
| HL_7F0D_053 | 1/A/2265:2274 | No text annotation | geometric HL_7RQB_050 NA | |
| HL_7F0D_055 | 1/A/2445:2454 | No text annotation | homologous HL_4WF9_069 NA | |
| HL_7F0D_056 | 1/A/2486:2494 | No text annotation | geometric HL_7A0S_052 HL_11974.1 | |
| HL_7F0D_057 | 1/A/2502:2514 | No text annotation | geometric HL_7RQB_054 NA | |
| HL_7F0D_078 | 1/A/2542:2550 | No text annotation | homologous HL_9DFE_198 HL_02452.1 | |
| HL_7F0D_059 | 1/A/2562:2569 | Pseudoknot geometry | geometric HL_5J7L_189 NA | |
| HL_7F0D_060 | 1/A/2593:2600 | GNRA with extra cWW | geometric HL_4WF9_053 HL_45359.1 | |
| HL_7F0D_061 | 1/A/2612:2617 | GNRA | geometric HL_5DDP_001 HL_34789.1 | |
| HL_7F0D_062 | 1/A/2642:2651 | No text annotation | geometric HL_5J7L_192 NA | |
| HL_7F0D_063 | 1/A/2709:2717 | No text annotation | geometric HL_4V9F_062 HL_52011.1 | |
| HL_7F0D_064 | 1/A/2766:2773 | GNRA variation | geometric HL_5J7L_194 NA | |
| HL_7F0D_065 | 1/A/2789:2795 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7F0D_066 | 1/A/2832:2837 | GNRA | geometric HL_4LFB_028 HL_34789.1 | |
| HL_7F0D_067 | 1/A/2896:2901 | GNRA | geometric HL_5J7L_152 NA | |
| HL_7F0D_068 | 1/A/2939:2944 | Ribsomal LSU H95 | geometric HL_5J7L_198 NA | |
| HL_7F0D_069 | 1/A/2983:2997 | No text annotation | geometric HL_4V9F_068 HL_53269.1 | |
| HL_7F0D_071 | 1/A/3054:3062 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_7F0D_072 | 1/A/3091:3096 | GNRA | geometric HL_4LFB_028 HL_34789.1 | |
| HL_7F0D_073 | 1/B/37:43 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_7F0D_074 | 1/B/82:89 | Externally structured | geometric HL_8C3A_022 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7F0D_008 | No text annotation | ||
| HL_7F0D_009 | No text annotation | ||
| HL_7F0D_022 | No text annotation | ||
| HL_7F0D_023 | No text annotation | ||
| HL_7F0D_027 | No text annotation | ||
| HL_7F0D_076 | No text annotation | ||
| HL_7F0D_031 | No text annotation | ||
| HL_7F0D_032 | No text annotation | ||
| HL_7F0D_046 | No text annotation | ||
| HL_7F0D_050 | No text annotation | ||
| HL_7F0D_054 | No text annotation | ||
| HL_7F0D_058 | No text annotation | ||
| HL_7F0D_070 | GNRA-like with tWH |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7F0D_001 | 1/A/24:30, 1/A/598:604 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.1 | |
| IL_7F0D_002 | 1/A/36:37, 1/A/531:533 | Single bulged A | geometric IL_7RQB_002 NA | |
| IL_7F0D_003 | 1/A/43:44, 1/A/523:525 | Minor groove platform | geometric IL_5J7L_247 NA | |
| IL_7F0D_004 | 1/A/56:76, 1/A/110:114 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7F0D_005 | 1/A/81:85, 1/A/98:105 | Kink-turn | geometric IL_7A0S_004 IL_94910.1 | |
| IL_7F0D_006 | 1/A/185:186, 1/A/214:216 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_7F0D_007 | 1/A/190:196, 1/A/203:210 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_7F0D_008 | 1/A/241:247, 1/A/255:260 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_7F0D_010 | 1/A/323:325, 1/A/451:455 | No text annotation | geometric IL_4V9F_072 IL_75527.1 | |
| IL_7F0D_012 | 1/A/356:365, 1/A/439:441 | No text annotation | ||
| IL_7F0D_014 | 1/A/375:377, 1/A/426:430 | No text annotation | geometric IL_4WF9_014 IL_76658.1 | |
| IL_7F0D_015 | 1/A/383:385, 1/A/398:399 | Single bulged U | geometric IL_3TZR_002 NA | |
| IL_7F0D_016 | 1/A/570:573, 1/A/584:597 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7F0D_017 | 1/A/624:627, 1/A/656:659 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_7F0D_018 | 1/A/629:631, 1/A/652:654 | Isolated non-canonical cWW pair | geometric IL_5ZTM_002 NA | |
| IL_7F0D_135 | 1/A/636:637, 1/A/645:647 | No text annotation | geometric IL_8OI5_088 IL_15011.1 | |
| IL_7F0D_020 | 1/A/666:668, 1/A/677:679 | Isolated non-canonical cWW pair | geometric IL_5MWI_001 NA | |
| IL_7F0D_021 | 1/A/693:695, 1/A/794:795 | Single bulged G | geometric IL_4LVW_002 IL_28408.1 | |
| IL_7F0D_022 | 1/A/709:713, 1/A/722:726 | AAA cross-strand stack | geometric IL_7RQB_016 NA | |
| IL_7F0D_023 | 1/A/801:803, 1/A/935:937 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.1 | |
| IL_7F0D_024 | 1/A/803:807, 1/A/928:935 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7F0D_025 | 1/A/826:827, 1/A/892:894 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_7F0D_026 | 1/A/831:832, 1/A/857:859 | Single bulged G | geometric IL_4WF9_023 IL_28408.1 | |
| IL_7F0D_027 | 1/A/832:836, 1/A/853:857 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_7F0D_028 | 1/A/867:869, 1/A/886:887 | Major groove platform | geometric IL_5J7L_264 NA | |
| IL_7F0D_029 | 1/A/904:906, 1/A/916:920 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_7F0D_136 | 1/A/966:967, 1/A/1068:1070 | Single stack bend | homologous IL_7A0S_022 IL_15011.1 | |
| IL_7F0D_031 | 1/A/973:976, 1/A/1061:1062 | Major groove platform | geometric IL_4V9F_044 IL_48076.7 | |
| IL_7F0D_032 | 1/A/976:978, 1/A/1057:1061 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7F0D_033 | 1/A/985:991, 1/A/1044:1050 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_7F0D_034 | 1/A/991:992, 1/A/1042:1044 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_7F0D_035 | 1/A/993:998, 1/A/1038:1041 | C-loop | geometric IL_7RQB_029 NA | |
| IL_7F0D_036 | 1/A/1000:1002, 1/A/1034:1036 | Isolated cWS basepair | geometric IL_4WF9_034 NA | |
| IL_7F0D_037 | 1/A/1005:1010, 1/A/1026:1031 | No text annotation | ||
| IL_7F0D_038 | 1/A/1077:1078, 1/A/1095:1097 | Single bulged A | geometric IL_3MJA_001 NA | |
| IL_7F0D_039 | 1/A/1123:1125, 1/A/1289:1290 | Single bulged C | geometric IL_5J7L_276 NA | |
| IL_7F0D_040 | 1/A/1127:1131, 1/A/1283:1287 | UAA/GAN | geometric IL_4WF9_036 IL_08938.1 | |
| IL_7F0D_041 | 1/A/1133:1140, 1/A/1280:1281 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_7F0D_042 | 1/A/1140:1142, 1/A/1279:1280 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_7F0D_043 | 1/A/1147:1153, 1/A/1269:1274 | Kink-turn related | geometric IL_4V9F_040 IL_57188.6 | |
| IL_7F0D_044 | 1/A/1153:1159, 1/A/1253:1269 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_7F0D_045 | 1/A/1160:1163, 1/A/1250:1252 | Isolated non-canonical cWW pair | geometric IL_7A0S_038 IL_30229.1 | |
| IL_7F0D_048 | 1/A/1328:1330, 1/A/1378:1381 | Isolated cWS basepair | geometric IL_5J7L_286 NA | |
| IL_7F0D_049 | 1/A/1339:1346, 1/A/1365:1369 | Kink-turn | geometric IL_3U4M_004 IL_90775.1 | |
| IL_7F0D_050 | 1/A/1393:1400, 1/A/2249:2255 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_049 NA | |
| IL_7F0D_051 | 1/A/1450:1454, 1/A/1462:1464 | C-loop | geometric IL_4V9F_051 IL_63596.12 | |
| IL_7F0D_137 | 1/A/1482:1484, 1/A/1510:1511 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_7F0D_052 | 1/A/1482:1486, 1/A/1507:1511 | UAA/GAN | geometric IL_5J7L_292 NA | |
| IL_7F0D_138 | 1/A/1484:1486, 1/A/1507:1510 | No text annotation | ||
| IL_7F0D_053 | 1/A/1488:1492, 1/A/1501:1505 | tSH-tHW-tHS | geometric IL_5J7L_293 NA | |
| IL_7F0D_058 | 1/A/1568:1573, 1/A/1631:1636 | No text annotation | ||
| IL_7F0D_060 | 1/A/1579:1583, 1/A/1621:1625 | No text annotation | ||
| IL_7F0D_065 | 1/A/1655:1659, 1/A/1814:1817 | No text annotation | ||
| IL_7F0D_066 | 1/A/1670:1673, 1/A/1794:1798 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 NA | |
| IL_7F0D_128 | 1/A/1675:1678, 1/A/1788:1792 | No text annotation | homologous IL_9DFE_056 IL_74317.1 | |
| IL_7F0D_068 | 1/A/1706:1709, 1/A/1759:1763 | No text annotation | geometric IL_5J7L_299 NA | |
| IL_7F0D_069 | 1/A/1711:1717, 1/A/1751:1757 | No text annotation | ||
| IL_7F0D_070 | 1/A/1719:1720, 1/A/1743:1749 | No text annotation | ||
| IL_7F0D_071 | 1/A/1726:1728, 1/A/1736:1737 | Single bulged A | geometric IL_7RQB_062 NA | |
| IL_7F0D_072 | 1/A/1768:1770, 1/A/1778:1779 | Single stack bend | geometric IL_4C7O_002 NA | |
| IL_7F0D_073 | 1/A/1886:1891, 1/A/2242:2244 | No text annotation | homologous IL_8VTW_063 NA | |
| IL_7F0D_074 | 1/A/1898:1900, 1/A/2233:2235 | Isolated tWW turn | geometric IL_5J7L_305 NA | |
| IL_7F0D_075 | 1/A/1901:1904, 1/A/2231:2232 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_7F0D_129 | 1/A/1901:1909, 1/A/2228:2232 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_7F0D_076 | 1/A/1904:1909, 1/A/2228:2231 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_7F0D_077 | 1/A/1921:1926, 1/A/1931:1937 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_7F0D_078 | 1/A/1947:1952, 1/A/1977:1980 | tWW and near cWH | geometric IL_6DLR_005 IL_40706.1 | |
| IL_7F0D_131 | 1/A/1952:1960, 1/A/1968:1977 | No text annotation | ||
| IL_7F0D_079 | 1/A/2004:2005, 1/A/2218:2220 | Single bulged A | geometric IL_4V9F_064 IL_14190.1 | |
| IL_7F0D_080 | 1/A/2032:2038, 1/A/2047:2055 | Kink-turn related | geometric IL_7RQB_070 NA | |
| IL_7F0D_081 | 1/A/2071:2074, 1/A/2140:2141 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 NA | |
| IL_7F0D_082 | 1/A/2075:2076, 1/A/2136:2139 | Major groove intercalation | geometric IL_4V9F_067 IL_71421.1 | |
| IL_7F0D_083 | 1/A/2080:2083, 1/A/2131:2132 | No text annotation | homologous IL_8VTW_072 NA | |
| IL_7F0D_084 | 1/A/2085:2089, 1/A/2125:2129 | UAA/GAN with extra stack | geometric IL_7RQB_074 NA | |
| IL_7F0D_085 | 1/A/2090:2095, 1/A/2119:2124 | No text annotation | ||
| IL_7F0D_132 | 1/A/2098:2101, 1/A/2112:2116 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_7F0D_088 | 1/A/2171:2172, 1/A/2202:2205 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_7F0D_089 | 1/A/2172:2183, 1/A/2199:2202 | No text annotation | geometric IL_4V9F_071 IL_04332.3 | |
| IL_7F0D_090 | 1/A/2288:2290, 1/A/2855:2856 | Major groove platform | geometric IL_7RQB_078 NA | |
| IL_7F0D_091 | 1/A/2292:2294, 1/A/2850:2853 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
| IL_7F0D_092 | 1/A/2307:2308, 1/A/2676:2679 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7F0D_093 | 1/A/2318:2321, 1/A/2473:2477 | No text annotation | geometric IL_3NPQ_006 IL_93503.1 | |
| IL_7F0D_094 | 1/A/2322:2324, 1/A/2470:2472 | No text annotation | geometric IL_7RQB_083 NA | |
| IL_7F0D_095 | 1/A/2344:2380, 1/A/2385:2419 | No text annotation | ||
| IL_7F0D_096 | 1/A/2439:2441, 1/A/2458:2459 | Single bulged C | geometric IL_6ZDP_001 NA | |
| IL_7F0D_097 | 1/A/2588:2591, 1/A/2602:2605 | Double sheared | geometric IL_4WF9_087 IL_58355.1 | |
| IL_7F0D_098 | 1/A/2639:2641, 1/A/2652:2653 | Single bulged C | geometric IL_8C3A_002 NA | |
| IL_7F0D_099 | 1/A/2691:2692, 1/A/2736:2738 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_7F0D_100 | 1/A/2692:2693, 1/A/2734:2736 | Major groove platform | geometric IL_3NKB_002 NA | |
| IL_7F0D_101 | 1/A/2695:2697, 1/A/2731:2732 | Major groove platform | geometric IL_3OXE_003 IL_48076.7 | |
| IL_7F0D_102 | 1/A/2697:2699, 1/A/2727:2731 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_7F0D_103 | 1/A/2699:2701, 1/A/2725:2727 | Isolated non-canonical cWW pair | geometric IL_5B2P_001 IL_71625.1 | |
| IL_7F0D_104 | 1/A/2704:2708, 1/A/2718:2722 | Double sheared with non-canonical cWW | geometric IL_4WF9_093 IL_87767.1 | |
| IL_7F0D_105 | 1/A/2745:2746, 1/A/2818:2820 | Major groove platform | geometric IL_4V9F_086 IL_46637.1 | |
| IL_7F0D_106 | 1/A/2748:2750, 1/A/2812:2816 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_7F0D_107 | 1/A/2750:2751, 1/A/2809:2812 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_7F0D_108 | 1/A/2760:2761, 1/A/2778:2781 | Major groove platform with intercalation | geometric IL_5J7L_342 NA | |
| IL_7F0D_109 | 1/A/2829:2830, 1/A/2839:2841 | Single bulged A | geometric IL_1U9S_001 NA | |
| IL_7F0D_110 | 1/A/2874:2878, 1/A/3012:3020 | tSH-tHS-tHW | geometric IL_7RQB_102 NA | |
| IL_7F0D_111 | 1/A/2890:2896, 1/A/2901:2906 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.5 | |
| IL_7F0D_112 | 1/A/2918:2922, 1/A/2963:2965 | C-loop | geometric IL_5J7L_347 NA | |
| IL_7F0D_113 | 1/A/2925:2929, 1/A/2956:2960 | UAA/GAN related, with intercalation | geometric IL_4WF9_102 IL_82016.1 | |
| IL_7F0D_114 | 1/A/2933:2934, 1/A/2949:2952 | Multiple bulged bases | geometric IL_5J7L_349 NA | |
| IL_7F0D_115 | 1/A/2975:2980, 1/A/3000:3005 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_7F0D_116 | 1/A/3073:3074, 1/A/3113:3115 | Major groove intercalation | geometric IL_1U9S_006 NA | |
| IL_7F0D_117 | 1/A/3078:3080, 1/A/3106:3109 | No text annotation | geometric IL_4WF9_107 IL_05502.1 | |
| IL_7F0D_118 | 1/A/3082:3087, 1/A/3100:3104 | No text annotation | geometric IL_5TBW_133 NA | |
| IL_7F0D_119 | 1/B/2:4, 1/B/111:113 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_7F0D_120 | 1/B/16:17, 1/B/64:66 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_7F0D_121 | 1/B/22:28, 1/B/54:59 | No text annotation | ||
| IL_7F0D_122 | 1/B/29:30, 1/B/50:53 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_7F0D_123 | 1/B/33:37, 1/B/43:47 | Symmetric double minor groove platform | geometric IL_4V9F_104 IL_58103.12 | |
| IL_7F0D_124 | 1/B/70:78, 1/B/93:101 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7F0D_009 | No text annotation | ||
| IL_7F0D_011 | Single stack bend | ||
| IL_7F0D_013 | Multiple bulged bases | ||
| IL_7F0D_125 | Isolated non-canonical cWW pair | ||
| IL_7F0D_019 | No text annotation | ||
| IL_7F0D_030 | Other IL | ||
| IL_7F0D_046 | Kink-turn | ||
| IL_7F0D_126 | No text annotation | ||
| IL_7F0D_047 | No text annotation | ||
| IL_7F0D_054 | Single stack bend | ||
| IL_7F0D_055 | Single stack bend | ||
| IL_7F0D_056 | No text annotation | ||
| IL_7F0D_057 | Major groove platform | ||
| IL_7F0D_059 | No text annotation | ||
| IL_7F0D_061 | No text annotation | ||
| IL_7F0D_062 | Single stack bend | ||
| IL_7F0D_063 | Single stack bend | ||
| IL_7F0D_127 | No text annotation | ||
| IL_7F0D_064 | No text annotation | ||
| IL_7F0D_067 | No text annotation | ||
| IL_7F0D_130 | No text annotation | ||
| IL_7F0D_086 | No text annotation | ||
| IL_7F0D_087 | No text annotation | ||
| IL_7F0D_133 | No text annotation | ||
| IL_7F0D_134 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7F0D_001 | 1/A/30:31, 1/A/563:570, 1/A/597:598 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_7F0D_015 | 1/A/30:31, 1/A/563:573, 1/A/584:598 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_7F0D_016 | 1/A/32:35, 1/A/534:550, 1/A/557:562 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_7F0D_017 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_7F0D_018 | 1/A/318:320, 1/A/458:464, 1/A/488:493 | No text annotation | ||
| J3_7F0D_003 | 1/A/812:818, 1/A/902:904, 1/A/920:923 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7F0D_004 | 1/A/827:829, 1/A/861:865, 1/A/889:892 | No text annotation | homologous J3_8VTW_002 NA | |
| J3_7F0D_020 | 1/A/1182:1191, 1/A/1205:1220, 1/A/1229:1235 | No text annotation | ||
| J3_7F0D_005 | 1/A/1429:1434, 1/A/1860:1862, 1/A/1874:1877 | No text annotation | homologous J3_8VTW_004 NA | |
| J3_7F0D_006 | 1/A/1437:1440, 1/A/1840:1846, 1/A/1855:1857 | No text annotation | homologous J3_8VTW_005 NA | |
| J3_7F0D_007 | 1/A/1475:1481, 1/A/1512:1516, 1/A/1533:1534 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_7F0D_008 | 1/A/1547:1553, 1/A/1652:1654, 1/A/1818:1821 | No text annotation | ||
| J3_7F0D_009 | 1/A/1663:1667, 1/A/1801:1802, 1/A/1805:1810 | No text annotation | geometric J3_4V9F_017 J3_08594.1 | |
| J3_7F0D_010 | 1/A/2328:2330, 1/A/2433:2437, 1/A/2461:2466 | No text annotation | homologous J3_8VTW_006 NA | |
| J3_7F0D_021 | 1/A/2520:2522, 1/A/2622:2633, 1/A/2659:2665 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_7F0D_011 | 1/A/2533:2537, 1/A/2555:2561, 1/A/2570:2575 | No text annotation | ||
| J3_7F0D_022 | 1/A/2755:2758, 1/A/2783:2785, 1/A/2799:2805 | No text annotation | homologous J3_9DFE_017 J3_32601.6 | |
| J3_7F0D_013 | 1/A/3049:3051, 1/A/3065:3071, 1/A/3117:3121 | No text annotation | ||
| J3_7F0D_014 | 1/B/9:15, 1/B/67:69, 1/B/102:106 | No text annotation | homologous J3_5J7L_049 NA | |
| J4_7F0D_001 | 1/A/270:275, 1/A/313:318, 1/A/493:497, 1/A/508:513 | No text annotation | ||
| J4_7F0D_002 | 1/A/379:383, 1/A/399:402, 1/A/406:408, 1/A/420:424 | No text annotation | homologous J4_4WF9_002 J4_16174.1 | |
| J4_7F0D_003 | 1/A/1401:1407, 1/A/1425:1426, 1/A/1880:1883, 1/A/2247:2248 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_7F0D_004 | 1/A/1441:1445, 1/A/1469:1474, 1/A/1535:1536, 1/A/1832:1839 | No text annotation | ||
| J4_7F0D_005 | 1/A/1681:1684, 1/A/1703:1706, 1/A/1763:1768, 1/A/1779:1785 | No text annotation | ||
| J4_7F0D_006 | 1/A/2005:2010, 1/A/2022:2026, 1/A/2061:2064, 1/A/2213:2218 | No text annotation | ||
| J4_7F0D_007 | 1/A/2067:2069, 1/A/2143:2144, 1/A/2162:2171, 1/A/2205:2210 | No text annotation | homologous J4_5J7L_026 NA | |
| J4_7F0D_008 | 1/A/2523:2527, 1/A/2581:2585, 1/A/2608:2610, 1/A/2619:2621 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_7F0D_009 | 1/A/2880:2884, 1/A/2912:2914, 1/A/2969:2973, 1/A/3007:3010 | No text annotation | ||
| J5_7F0D_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/150:153, 1/A/177:180 | No text annotation | ||
| J5_7F0D_002 | 1/A/270:275, 1/A/313:320, 1/A/458:464, 1/A/488:497, 1/A/508:513 | No text annotation | ||
| J5_7F0D_003 | 1/A/619:621, 1/A/662:666, 1/A/679:681, 1/A/1392:1393, 1/A/2255:2256 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_7F0D_004 | 1/A/686:691, 1/A/797:800, 1/A/938:941, 1/A/1327:1328, 1/A/1381:1387 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_7F0D_009 | 1/A/704:708, 1/A/727:733, 1/A/738:742, 1/A/754:760, 1/A/779:785 | No text annotation | ||
| J5_7F0D_006 | 1/A/1909:1917, 1/A/1941:1942, 1/A/1985:1986, 1/A/1990:1998, 1/A/2226:2228 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_7F0D_007 | 1/A/2295:2302, 1/A/2684:2691, 1/A/2738:2745, 1/A/2820:2826, 1/A/2844:2849 | No text annotation | ||
| J5_7F0D_008 | 1/A/2311:2314, 1/A/2481:2484, 1/A/2496:2497, 1/A/2519:2520, 1/A/2665:2673 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J6_7F0D_001 | 1/A/45:46, 1/A/181:185, 1/A/216:226, 1/A/233:237, 1/A/264:268, 1/A/515:522 | No text annotation | ||
| J6_7F0D_002 | 1/A/2311:2314, 1/A/2481:2484, 1/A/2496:2497, 1/A/2519:2522, 1/A/2622:2633, 1/A/2659:2673 | No text annotation | ||
| J7_7F0D_001 | 1/A/945:951, 1/A/964:965, 1/A/1071:1074, 1/A/1100:1105, 1/A/1116:1120, 1/A/1293:1294, 1/A/1317:1323 | No text annotation | ||
| J8_7F0D_001 | 1/A/7:15, 1/A/613:619, 1/A/2256:2261, 1/A/2278:2281, 1/A/2863:2868, 1/A/3026:3029, 1/A/3041:3046, 1/A/3124:3130 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7F0D_023 | No text annotation | ||
| J3_7F0D_002 | No text annotation | ||
| J3_7F0D_019 | No text annotation | ||
| J3_7F0D_012 | No text annotation | ||
| J5_7F0D_005 | No text annotation |
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