HL_7F0D_040

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

7F0D|1|A|C|1730, 7F0D|1|A|U|1734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_040 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.2532

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7F0D|1|A|G|1729
7F0D|1|A|C|1730
7F0D|1|A|A|1731
7F0D|1|A|A|1732
7F0D|1|A|A|1733
7F0D|1|A|U|1734
7F0D|1|A|C|1735

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2