HL_7F5S_016

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CCGAAGAGG

Length

9 nucleotides

Bulged bases

7F5S|1|L5|C|1252, 7F5S|1|L5|A|1254, 7F5S|1|L5|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_016 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3594

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7F5S|1|L5|C|1251
7F5S|1|L5|C|1252
7F5S|1|L5|G|1253
7F5S|1|L5|A|1254
7F5S|1|L5|A|1255
7F5S|1|L5|G|1256
7F5S|1|L5|A|1257
7F5S|1|L5|G|1258
7F5S|1|L5|G|1259

Current chains

Chain L5

28S rRNA

Nearby chains