HL_7F5S_021

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_021 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3272

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7F5S|1|L5|C|1436
7F5S|1|L5|C|1437
7F5S|1|L5|U|1438
7F5S|1|L5|C|1439
7F5S|1|L5|U|1440
7F5S|1|L5|C|1441
7F5S|1|L5|C|1442
7F5S|1|L5|A|1443
7F5S|1|L5|G|1444
7F5S|1|L5|U|1445
7F5S|1|L5|C|1446
7F5S|1|L5|C|1447
7F5S|1|L5|G|1448

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29