HL_7F5S_048

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUCGGGCC

Length

8 nucleotides

Bulged bases

7F5S|1|L5|U|2908, 7F5S|1|L5|C|2909

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_048 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3773

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7F5S|1|L5|G|2907
7F5S|1|L5|U|2908
7F5S|1|L5|C|2909
7F5S|1|L5|G|2910
7F5S|1|L5|G|3585
7F5S|1|L5|G|3586
7F5S|1|L5|C|3587
7F5S|1|L5|C|3588

Current chains

Chain L5

28S rRNA

Nearby chains