HL_7F5S_053

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

G(PSU)AAC(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

7F5S|1|L5|A|3760, 7F5S|1|L5|C|3761, 7F5S|1|L5|A|3763

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_053 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2276

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7F5S|1|L5|G|3757
7F5S|1|L5|PSU|3758
7F5S|1|L5|A|3759
7F5S|1|L5|A|3760
7F5S|1|L5|C|3761
7F5S|1|L5|PSU|3762
7F5S|1|L5|A|3763
7F5S|1|L5|PSU|3764
7F5S|1|L5|G|3765
7F5S|1|L5|A|3766
7F5S|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains