HL_7F5S_060

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

7F5S|1|L5|A|4214, 7F5S|1|L5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_060 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1072

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

7F5S|1|L5|U|4210
7F5S|1|L5|C|4211
7F5S|1|L5|A|4212
7F5S|1|L5|A|4213
7F5S|1|L5|A|4214
7F5S|1|L5|C|4215
7F5S|1|L5|G|4216
7F5S|1|L5|G|4217
7F5S|1|L5|U|4218
7F5S|1|L5|A|4219
7F5S|1|L5|6MZ|4220
7F5S|1|L5|C|4221
7F5S|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29