3D structure

PDB id
7F5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
human delta-METTL18 60S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
U(PSU)UGGGUUU(PSU)A
Length
11 nucleotides
Bulged bases
7F5S|1|L5|U|4354
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7F5S_065 not in the Motif Atlas
Homologous match to HL_8C3A_061
Geometric discrepancy: 0.5364
The information below is about HL_8C3A_061
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

7F5S|1|L5|U|4352
7F5S|1|L5|PSU|4353
7F5S|1|L5|U|4354
7F5S|1|L5|G|4355
7F5S|1|L5|G|4356
7F5S|1|L5|G|4357
7F5S|1|L5|U|4358
7F5S|1|L5|U|4359
7F5S|1|L5|U|4360
7F5S|1|L5|PSU|4361
7F5S|1|L5|A|4362

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain La
60S ribosomal protein L27a
Chain Li
60S ribosomal protein L36
Chain Lo
60S ribosomal protein L36a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1658 s