HL_7F5S_085

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCUUG(1MA)(A2M)AC(A2M)

Length

10 nucleotides

Bulged bases

7F5S|1|L5|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_085 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0668

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7F5S|1|L5|U|1317
7F5S|1|L5|C|1318
7F5S|1|L5|U|1319
7F5S|1|L5|U|1320
7F5S|1|L5|G|1321
7F5S|1|L5|1MA|1322
7F5S|1|L5|A2M|1323
7F5S|1|L5|A|1324
7F5S|1|L5|C|1325
7F5S|1|L5|A2M|1326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32