HL_7JQB_016
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 7JQB|1|A|G|821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JQB_016 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.0727
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
7JQB|1|A|U|820
7JQB|1|A|G|821
7JQB|1|A|U|822
7JQB|1|A|U|823
7JQB|1|A|C|824
7JQB|1|A|A|825
7JQB|1|A|A|826
7JQB|1|A|A|827
7JQB|1|A|G|828
Current chains
- Chain A
- rRNA
Nearby chains
- Chain K
- uS4
- Chain M
- 40S ribosomal protein S4
- Chain Z
- 40S ribosomal protein S24
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