Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7JQB_0011/A/7:17No text annotation
homologous
HL_4V88_186
NA
HL_7JQB_0021/A/69:80No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_7JQB_0031/A/156:162GNRA related
homologous
HL_4V88_188
NA
HL_7JQB_0041/A/197:202GNRA
geometric
HL_4LFB_007
HL_37824.8
HL_7JQB_0051/A/288:295T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_7JQB_0071/A/377:387No text annotation
HL_7JQB_0081/A/416:421No text annotation
homologous
HL_4V88_194
NA
HL_7JQB_0091/A/441:452No text annotation
homologous
HL_4V88_195
NA
HL_7JQB_0101/A/462:467UNCG
homologous
HL_4V88_196
NA
HL_7JQB_0111/A/498:504No text annotation
homologous
HL_4V88_197
NA
HL_7JQB_0121/A/539:544GNRA
geometric
HL_4V9F_070
HL_37824.8
HL_7JQB_0131/A/569:581No text annotation
geometric
HL_4V88_199
NA
HL_7JQB_0141/A/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_7JQB_0161/A/820:828No text annotation
homologous
HL_4V88_203
NA
HL_7JQB_0181/A/885:901No text annotation
HL_7JQB_0191/A/957:966No text annotation
homologous
HL_4V88_206
NA
HL_7JQB_0201/A/994:999GNRA
homologous
HL_4V88_207
NA
HL_7JQB_0211/A/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_7JQB_0221/A/1114:1119Externally structured
geometric
HL_5TBW_022
NA
HL_7JQB_0231/A/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_7JQB_0241/A/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_7JQB_0251/A/1245:1254No text annotation
homologous
HL_4V88_212
NA
HL_7JQB_0261/A/1295:1304Anticodon loop related
homologous
HL_4V88_213
NA
HL_7JQB_0271/A/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_7JQB_0281/A/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_7JQB_0301/A/1460:1466GNRA
homologous
HL_4V88_217
NA
HL_7JQB_0311/A/1565:1570GNRA
homologous
HL_4V88_218
NA
HL_7JQB_0321/A/1614:1625No text annotation
homologous
HL_4V88_219
NA
HL_7JQB_0331/A/1658:1666No text annotation
homologous
HL_4V88_220
NA
HL_7JQB_0351/A/1847:1852GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_7JQB_006No text annotation
HL_7JQB_015No text annotation
HL_7JQB_017No text annotation
HL_7JQB_029No text annotation
HL_7JQB_034No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7JQB_0011/A/23:25,
1/A/649:651
Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_87907.2
IL_7JQB_0021/A/34:36,
1/A/519:521
Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_7JQB_0031/A/37:40,
1/A/514:518
Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_7JQB_0041/A/41:47,
1/A/479:481
No text annotation
geometric
IL_4V88_387
NA
IL_7JQB_0051/A/49:51,
1/A/476:477
Minor groove platform
homologous
IL_4V88_388
NA
IL_7JQB_0061/A/57:62,
1/A/86:88
No text annotation
homologous
IL_4V88_389
NA
IL_7JQB_0071/A/63:68,
1/A/81:85
No text annotation
homologous
IL_4V88_390
NA
IL_7JQB_0081/A/108:110,
1/A/351:353
Isolated non-canonical cWW pair
geometric
IL_1ZX7_004
NA
IL_7JQB_0091/A/110:112,
1/A/349:351
Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_87907.2
IL_7JQB_0101/A/112:115,
1/A/348:349
Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7JQB_0111/A/116:121,
1/A/343:347
No text annotation
homologous
IL_4V88_393
NA
IL_7JQB_0131/A/145:151,
1/A/167:174
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_7JQB_0141/A/152:154,
1/A/164:166
Isolated cWH basepair
geometric
IL_3R1C_018
IL_10167.6
IL_7JQB_0151/A/188:192,
1/A/207:211
Triple sheared
geometric
IL_4WFL_001
IL_17948.2
IL_7JQB_0161/A/216:219,
1/A/302:309
No text annotation
geometric
IL_1GID_008
NA
IL_7JQB_0181/A/312:314,
1/A/336:337
Single bulged A
homologous
IL_4V88_399
NA
IL_7JQB_0191/A/317:319,
1/A/332:333
Single stack bend
geometric
IL_5TBW_009
NA
IL_7JQB_0201/A/359:364,
1/A/396:403
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_7JQB_0211/A/366:371,
1/A/393:394
No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_7JQB_0221/A/411:413,
1/A/424:429
No text annotation
homologous
IL_4V88_404
NA
IL_7JQB_0231/A/437:439,
1/A/454:456
Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_7JQB_0241/A/459:461,
1/A/468:470
Isolated near basepair
homologous
IL_4V88_406
NA
IL_7JQB_0251/A/487:489,
1/A/511:512
Single bulged U
homologous
IL_4V88_407
NA
IL_7JQB_0261/A/491:495,
1/A/508:509
C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_7JQB_0271/A/495:496,
1/A/506:508
Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_7JQB_0281/A/529:530,
1/A/554:556
Single bulged A
homologous
IL_4V88_409
NA
IL_7JQB_0291/A/535:537,
1/A/546:549
Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_7JQB_0301/A/563:565,
1/A/585:592
No text annotation
homologous
IL_8C3A_420
NA
IL_7JQB_0311/A/566:569,
1/A/581:584
Tandem non-canonical cWW pairs
geometric
IL_5C5W_003
NA
IL_7JQB_0321/A/599:608,
1/A/635:637
No text annotation
IL_7JQB_0331/A/611:617,
1/A/624:632
Kink-turn related
homologous
IL_8C3A_425
NA
IL_7JQB_0341/A/663:665,
1/A/1162:1164
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_7JQB_0351/A/665:671,
1/A/1161:1162
No text annotation
geometric
IL_4LFB_022
IL_38186.6
IL_7JQB_0361/A/673:675,
1/A/1030:1032
Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_7JQB_0371/A/676:680,
1/A/1025:1029
tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_7JQB_0381/A/692:696,
1/A/730:734
Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_49751.4
IL_7JQB_0391/A/752:755,
1/A/789:791
No text annotation
IL_7JQB_0401/A/802:803,
1/A/860:863
Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_7JQB_0411/A/805:807,
1/A/856:858
Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_7JQB_0421/A/807:815,
1/A/849:856
No text annotation
geometric
IL_4V88_425
NA
IL_7JQB_0431/A/874:876,
1/A/910:912
Isolated non-canonical cWW pair
geometric
IL_5Y85_006
IL_87907.2
IL_7JQB_0441/A/877:879,
1/A/907:909
Isolated non-canonical cWW pair
geometric
IL_5J7L_061
IL_87907.2
IL_7JQB_0451/A/922:923,
1/A/1019:1022
Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_7JQB_0931/A/925:926,
1/A/1015:1017
Single bulged U
geometric
IL_3NDB_005
IL_89505.4
IL_7JQB_0941/A/928:931,
1/A/1010:1013
No text annotation
homologous
IL_8P9A_419
IL_85033.2
IL_7JQB_0481/A/931:935,
1/A/1007:1010
Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_7JQB_0491/A/942:945,
1/A/981:984
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_7JQB_0501/A/952:956,
1/A/967:974
Kink-turn
homologous
IL_4V88_434
NA
IL_7JQB_0511/A/1042:1047,
1/A/1071:1073
Other IL
geometric
IL_4V88_435
NA
IL_7JQB_0521/A/1047:1051,
1/A/1067:1071
tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_7JQB_0531/A/1091:1093,
1/A/1152:1158
No text annotation
homologous
IL_4V88_437
NA
IL_7JQB_0541/A/1098:1101,
1/A/1131:1134
Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7JQB_0551/A/1101:1103,
1/A/1129:1131
Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_87907.2
IL_7JQB_0561/A/1108:1110,
1/A/1123:1124
Minor groove platform
geometric
IL_4V88_412
NA
IL_7JQB_0571/A/1168:1175,
1/A/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_7JQB_0581/A/1203:1204,
1/A/1694:1696
Single bulged A
homologous
IL_4V88_441
NA
IL_7JQB_0591/A/1206:1208,
1/A/1691:1692
Single bulged G
homologous
IL_4V88_442
NA
IL_7JQB_0601/A/1214:1217,
1/A/1681:1685
C-loop
homologous
IL_4V88_443
NA
IL_7JQB_0611/A/1230:1232,
1/A/1526:1528
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_7JQB_0621/A/1235:1236,
1/A/1521:1523
Minor groove platform
homologous
IL_4V88_445
NA
IL_7JQB_1001/A/1270:1272,
1/A/1510:1512
Isolated non-canonical cWW pair
homologous
IL_8P9A_434
IL_87907.2
IL_7JQB_0641/A/1281:1287,
1/A/1314:1316
No text annotation
IL_7JQB_0951/A/1281:1290,
1/A/1309:1316
No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_7JQB_0651/A/1287:1290,
1/A/1309:1314
No text annotation
IL_7JQB_0661/A/1291:1294,
1/A/1305:1308
No text annotation
IL_7JQB_0671/A/1325:1327,
1/A/1502:1503
Single bulged U
homologous
IL_4V88_449
NA
IL_7JQB_0681/A/1329:1333,
1/A/1498:1500
Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_7JQB_0961/A/1329:1335,
1/A/1492:1500
No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_7JQB_0691/A/1333:1335,
1/A/1492:1498
Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_7JQB_0701/A/1337:1338,
1/A/1488:1490
Single bulged A
homologous
IL_4V88_452
NA
IL_7JQB_0711/A/1347:1349,
1/A/1380:1382
Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_7JQB_0721/A/1363:1365,
1/A/1374:1375
Minor groove platform
geometric
IL_5TBW_039
NA
IL_7JQB_0731/A/1395:1399,
1/A/1447:1450
No text annotation
IL_7JQB_0741/A/1402:1405,
1/A/1441:1444
Minor groove platform
homologous
IL_4V88_456
NA
IL_7JQB_0981/A/1412:1414,
1/A/1426:1429
No text annotation
homologous
IL_8C3A_464
NA
IL_7JQB_0761/A/1537:1539,
1/A/1594:1596
Isolated non-canonical cWW pair
geometric
IL_4KNQ_003
IL_87907.2
IL_7JQB_0991/A/1540:1550,
1/A/1582:1593
No text annotation
IL_7JQB_0771/A/1550:1558,
1/A/1577:1582
180 degree turn
geometric
IL_5J7L_055
IL_11344.2
IL_7JQB_0781/A/1560:1562,
1/A/1573:1575
Isolated non-canonical cWW pair
geometric
IL_3SZX_001
IL_87907.2
IL_7JQB_0791/A/1604:1610,
1/A/1629:1635
No text annotation
homologous
IL_8C3A_469
NA
IL_7JQB_0801/A/1700:1702,
1/A/1833:1836
No text annotation
geometric
IL_4V88_463
NA
IL_7JQB_0811/A/1702:1705,
1/A/1829:1833
No text annotation
homologous
IL_4V88_464
NA
IL_7JQB_0821/A/1706:1708,
1/A/1826:1828
Isolated non-canonical cWW pair
geometric
IL_3GM7_003
IL_87907.2
IL_7JQB_0831/A/1708:1711,
1/A/1822:1826
Tandem non-canonical cWW pairs
geometric
IL_4EYA_010
IL_51479.1
IL_7JQB_0841/A/1714:1716,
1/A/1817:1819
Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_7JQB_0851/A/1717:1720,
1/A/1813:1816
Double sheared
homologous
IL_4V88_468
NA
IL_7JQB_0861/A/1720:1722,
1/A/1812:1813
Single bulged U
homologous
IL_4V88_469
NA
IL_7JQB_0871/A/1729:1731,
1/A/1803:1805
Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_7JQB_0881/A/1733:1736,
1/A/1798:1801
Double sheared
homologous
IL_4V88_471
NA
IL_7JQB_0891/A/1739:1741,
1/A/1793:1795
Isolated non-canonical cWW pair
geometric
IL_4E48_004
IL_87907.2
IL_7JQB_0901/A/1742:1746,
1/A/1788:1792
Triple sheared
homologous
IL_4V88_474
NA
IL_7JQB_0911/A/1750:1751,
1/A/1782:1784
Major groove platform
geometric
IL_3OXE_003
IL_48076.6
IL_7JQB_0921/A/1751:1752,
1/A/1780:1782
Single stack bend
geometric
IL_7KGA_003
IL_90729.1

Problematic loops

#loop idProblemSequence
IL_7JQB_012No text annotation
IL_7JQB_017No text annotation
IL_7JQB_046Tandem non-canonical cWW pairs
IL_7JQB_047No text annotation
IL_7JQB_063Tandem non-canonical cWW pairs
IL_7JQB_097No text annotation
IL_7JQB_075Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7JQB_0011/A/40:41,
1/A/481:487,
1/A/512:514
No text annotation
geometric
J3_4V88_078
NA
J3_7JQB_0141/A/40:47,
1/A/479:487,
1/A/512:514
No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_7JQB_0021/A/682:685,
1/A/917:922,
1/A/1022:1023
No text annotation
J3_7JQB_0151/A/682:685,
1/A/917:923,
1/A/1019:1023
No text annotation
J3_7JQB_0031/A/816:819,
1/A/829:831,
1/A/843:848
No text annotation
homologous
J3_4V88_032
NA
J3_7JQB_0041/A/938:941,
1/A/985:993,
1/A/1000:1004
No text annotation
homologous
J3_4V88_033
NA
J3_7JQB_0051/A/1094:1096,
1/A/1136:1140,
1/A/1147:1151
No text annotation
J3_7JQB_0061/A/1218:1221,
1/A/1645:1651,
1/A/1673:1680
No text annotation
homologous
J3_4V88_035
NA
J3_7JQB_0071/A/1225:1228,
1/A/1530:1532,
1/A/1638:1641
No text annotation
homologous
J3_4V88_036
NA
J3_7JQB_0081/A/1237:1244,
1/A/1255:1266,
1/A/1516:1520
No text annotation
homologous
J3_8C3A_040
NA
J3_7JQB_0091/A/1272:1277,
1/A/1320:1324,
1/A/1504:1510
No text annotation
homologous
J3_8C3A_041
NA
J3_7JQB_0171/A/1340:1345,
1/A/1384:1389,
1/A/1481:1486
No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_7JQB_0111/A/1350:1351,
1/A/1360:1363,
1/A/1375:1379
No text annotation
homologous
J3_8C3A_085
NA
J3_7JQB_0121/A/1391:1395,
1/A/1450:1456,
1/A/1470:1479
No text annotation
J3_7JQB_0131/A/1532:1536,
1/A/1597:1604,
1/A/1635:1638
No text annotation
homologous
J3_4V88_041
NA
J4_7JQB_0011/A/98:106,
1/A/355:357,
1/A/405:409,
1/A/431:432
No text annotation
homologous
J4_8C3A_021
NA
J4_7JQB_0021/A/671:673,
1/A/1032:1037,
1/A/1078:1089,
1/A/1160:1161
No text annotation
homologous
J4_8P9A_022
J4_61885.6
J5_7JQB_0011/A/30:34,
1/A/521:527,
1/A/558:563,
1/A/592:595,
1/A/641:644
No text annotation
homologous
J5_8C3A_018
NA
J5_7JQB_0021/A/30:34,
1/A/521:527,
1/A/558:565,
1/A/585:595,
1/A/641:644
No text annotation
J5_7JQB_0031/A/53:56,
1/A/89:96,
1/A/434:436,
1/A/457:459,
1/A/470:474
No text annotation
homologous
J5_8C3A_020
NA
J5_7JQB_0041/A/123:130,
1/A/182:185,
1/A/214:215,
1/A/310:312,
1/A/337:341
No text annotation

Problematic loops

#loop idProblemSequence
J3_7JQB_016No text annotation
J3_7JQB_010No text annotation

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