7JQB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7JQB_001 | 1/A/7:17 | No text annotation | homologous HL_4V88_186 NA | |
HL_7JQB_002 | 1/A/69:80 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
HL_7JQB_003 | 1/A/156:162 | GNRA related | homologous HL_4V88_188 NA | |
HL_7JQB_004 | 1/A/197:202 | GNRA | geometric HL_4LFB_007 HL_37824.8 | |
HL_7JQB_005 | 1/A/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
HL_7JQB_007 | 1/A/377:387 | No text annotation | ||
HL_7JQB_008 | 1/A/416:421 | No text annotation | homologous HL_4V88_194 NA | |
HL_7JQB_009 | 1/A/441:452 | No text annotation | homologous HL_4V88_195 NA | |
HL_7JQB_010 | 1/A/462:467 | UNCG | homologous HL_4V88_196 NA | |
HL_7JQB_011 | 1/A/498:504 | No text annotation | homologous HL_4V88_197 NA | |
HL_7JQB_012 | 1/A/539:544 | GNRA | geometric HL_4V9F_070 HL_37824.8 | |
HL_7JQB_013 | 1/A/569:581 | No text annotation | geometric HL_4V88_199 NA | |
HL_7JQB_014 | 1/A/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
HL_7JQB_016 | 1/A/820:828 | No text annotation | homologous HL_4V88_203 NA | |
HL_7JQB_018 | 1/A/885:901 | No text annotation | ||
HL_7JQB_019 | 1/A/957:966 | No text annotation | homologous HL_4V88_206 NA | |
HL_7JQB_020 | 1/A/994:999 | GNRA | homologous HL_4V88_207 NA | |
HL_7JQB_021 | 1/A/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
HL_7JQB_022 | 1/A/1114:1119 | Externally structured | geometric HL_5TBW_022 NA | |
HL_7JQB_023 | 1/A/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
HL_7JQB_024 | 1/A/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
HL_7JQB_025 | 1/A/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
HL_7JQB_026 | 1/A/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
HL_7JQB_027 | 1/A/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
HL_7JQB_028 | 1/A/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
HL_7JQB_030 | 1/A/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
HL_7JQB_031 | 1/A/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
HL_7JQB_032 | 1/A/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
HL_7JQB_033 | 1/A/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
HL_7JQB_035 | 1/A/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7JQB_006 | No text annotation | ||
HL_7JQB_015 | No text annotation | ||
HL_7JQB_017 | No text annotation | ||
HL_7JQB_029 | No text annotation | ||
HL_7JQB_034 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7JQB_001 | 1/A/23:25, 1/A/649:651 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_87907.2 | |
IL_7JQB_002 | 1/A/34:36, 1/A/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
IL_7JQB_003 | 1/A/37:40, 1/A/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
IL_7JQB_004 | 1/A/41:47, 1/A/479:481 | No text annotation | geometric IL_4V88_387 NA | |
IL_7JQB_005 | 1/A/49:51, 1/A/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
IL_7JQB_006 | 1/A/57:62, 1/A/86:88 | No text annotation | homologous IL_4V88_389 NA | |
IL_7JQB_007 | 1/A/63:68, 1/A/81:85 | No text annotation | homologous IL_4V88_390 NA | |
IL_7JQB_008 | 1/A/108:110, 1/A/351:353 | Isolated non-canonical cWW pair | geometric IL_1ZX7_004 NA | |
IL_7JQB_009 | 1/A/110:112, 1/A/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
IL_7JQB_010 | 1/A/112:115, 1/A/348:349 | Multiple bulged bases | geometric IL_4V88_392 NA | |
IL_7JQB_011 | 1/A/116:121, 1/A/343:347 | No text annotation | homologous IL_4V88_393 NA | |
IL_7JQB_013 | 1/A/145:151, 1/A/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
IL_7JQB_014 | 1/A/152:154, 1/A/164:166 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10167.6 | |
IL_7JQB_015 | 1/A/188:192, 1/A/207:211 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
IL_7JQB_016 | 1/A/216:219, 1/A/302:309 | No text annotation | geometric IL_1GID_008 NA | |
IL_7JQB_018 | 1/A/312:314, 1/A/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
IL_7JQB_019 | 1/A/317:319, 1/A/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
IL_7JQB_020 | 1/A/359:364, 1/A/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
IL_7JQB_021 | 1/A/366:371, 1/A/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
IL_7JQB_022 | 1/A/411:413, 1/A/424:429 | No text annotation | homologous IL_4V88_404 NA | |
IL_7JQB_023 | 1/A/437:439, 1/A/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
IL_7JQB_024 | 1/A/459:461, 1/A/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
IL_7JQB_025 | 1/A/487:489, 1/A/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
IL_7JQB_026 | 1/A/491:495, 1/A/508:509 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
IL_7JQB_027 | 1/A/495:496, 1/A/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
IL_7JQB_028 | 1/A/529:530, 1/A/554:556 | Single bulged A | homologous IL_4V88_409 NA | |
IL_7JQB_029 | 1/A/535:537, 1/A/546:549 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 IL_57744.1 | |
IL_7JQB_030 | 1/A/563:565, 1/A/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
IL_7JQB_031 | 1/A/566:569, 1/A/581:584 | Tandem non-canonical cWW pairs | geometric IL_5C5W_003 NA | |
IL_7JQB_032 | 1/A/599:608, 1/A/635:637 | No text annotation | ||
IL_7JQB_033 | 1/A/611:617, 1/A/624:632 | Kink-turn related | homologous IL_8C3A_425 NA | |
IL_7JQB_034 | 1/A/663:665, 1/A/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
IL_7JQB_035 | 1/A/665:671, 1/A/1161:1162 | No text annotation | geometric IL_4LFB_022 IL_38186.6 | |
IL_7JQB_036 | 1/A/673:675, 1/A/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
IL_7JQB_037 | 1/A/676:680, 1/A/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
IL_7JQB_038 | 1/A/692:696, 1/A/730:734 | Triple non-canonical cWW pairs | geometric IL_8S95_002 IL_49751.4 | |
IL_7JQB_039 | 1/A/752:755, 1/A/789:791 | No text annotation | ||
IL_7JQB_040 | 1/A/802:803, 1/A/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
IL_7JQB_041 | 1/A/805:807, 1/A/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
IL_7JQB_042 | 1/A/807:815, 1/A/849:856 | No text annotation | geometric IL_4V88_425 NA | |
IL_7JQB_043 | 1/A/874:876, 1/A/910:912 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_87907.2 | |
IL_7JQB_044 | 1/A/877:879, 1/A/907:909 | Isolated non-canonical cWW pair | geometric IL_5J7L_061 IL_87907.2 | |
IL_7JQB_045 | 1/A/922:923, 1/A/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
IL_7JQB_093 | 1/A/925:926, 1/A/1015:1017 | Single bulged U | geometric IL_3NDB_005 IL_89505.4 | |
IL_7JQB_094 | 1/A/928:931, 1/A/1010:1013 | No text annotation | homologous IL_8P9A_419 IL_85033.2 | |
IL_7JQB_048 | 1/A/931:935, 1/A/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
IL_7JQB_049 | 1/A/942:945, 1/A/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
IL_7JQB_050 | 1/A/952:956, 1/A/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
IL_7JQB_051 | 1/A/1042:1047, 1/A/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
IL_7JQB_052 | 1/A/1047:1051, 1/A/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
IL_7JQB_053 | 1/A/1091:1093, 1/A/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
IL_7JQB_054 | 1/A/1098:1101, 1/A/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
IL_7JQB_055 | 1/A/1101:1103, 1/A/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
IL_7JQB_056 | 1/A/1108:1110, 1/A/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
IL_7JQB_057 | 1/A/1168:1175, 1/A/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
IL_7JQB_058 | 1/A/1203:1204, 1/A/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
IL_7JQB_059 | 1/A/1206:1208, 1/A/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
IL_7JQB_060 | 1/A/1214:1217, 1/A/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
IL_7JQB_061 | 1/A/1230:1232, 1/A/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
IL_7JQB_062 | 1/A/1235:1236, 1/A/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
IL_7JQB_100 | 1/A/1270:1272, 1/A/1510:1512 | Isolated non-canonical cWW pair | homologous IL_8P9A_434 IL_87907.2 | |
IL_7JQB_064 | 1/A/1281:1287, 1/A/1314:1316 | No text annotation | ||
IL_7JQB_095 | 1/A/1281:1290, 1/A/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
IL_7JQB_065 | 1/A/1287:1290, 1/A/1309:1314 | No text annotation | ||
IL_7JQB_066 | 1/A/1291:1294, 1/A/1305:1308 | No text annotation | ||
IL_7JQB_067 | 1/A/1325:1327, 1/A/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
IL_7JQB_068 | 1/A/1329:1333, 1/A/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
IL_7JQB_096 | 1/A/1329:1335, 1/A/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
IL_7JQB_069 | 1/A/1333:1335, 1/A/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
IL_7JQB_070 | 1/A/1337:1338, 1/A/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
IL_7JQB_071 | 1/A/1347:1349, 1/A/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
IL_7JQB_072 | 1/A/1363:1365, 1/A/1374:1375 | Minor groove platform | geometric IL_5TBW_039 NA | |
IL_7JQB_073 | 1/A/1395:1399, 1/A/1447:1450 | No text annotation | ||
IL_7JQB_074 | 1/A/1402:1405, 1/A/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
IL_7JQB_098 | 1/A/1412:1414, 1/A/1426:1429 | No text annotation | homologous IL_8C3A_464 NA | |
IL_7JQB_076 | 1/A/1537:1539, 1/A/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4KNQ_003 IL_87907.2 | |
IL_7JQB_099 | 1/A/1540:1550, 1/A/1582:1593 | No text annotation | ||
IL_7JQB_077 | 1/A/1550:1558, 1/A/1577:1582 | 180 degree turn | geometric IL_5J7L_055 IL_11344.2 | |
IL_7JQB_078 | 1/A/1560:1562, 1/A/1573:1575 | Isolated non-canonical cWW pair | geometric IL_3SZX_001 IL_87907.2 | |
IL_7JQB_079 | 1/A/1604:1610, 1/A/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
IL_7JQB_080 | 1/A/1700:1702, 1/A/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
IL_7JQB_081 | 1/A/1702:1705, 1/A/1829:1833 | No text annotation | homologous IL_4V88_464 NA | |
IL_7JQB_082 | 1/A/1706:1708, 1/A/1826:1828 | Isolated non-canonical cWW pair | geometric IL_3GM7_003 IL_87907.2 | |
IL_7JQB_083 | 1/A/1708:1711, 1/A/1822:1826 | Tandem non-canonical cWW pairs | geometric IL_4EYA_010 IL_51479.1 | |
IL_7JQB_084 | 1/A/1714:1716, 1/A/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
IL_7JQB_085 | 1/A/1717:1720, 1/A/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
IL_7JQB_086 | 1/A/1720:1722, 1/A/1812:1813 | Single bulged U | homologous IL_4V88_469 NA | |
IL_7JQB_087 | 1/A/1729:1731, 1/A/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
IL_7JQB_088 | 1/A/1733:1736, 1/A/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
IL_7JQB_089 | 1/A/1739:1741, 1/A/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_004 IL_87907.2 | |
IL_7JQB_090 | 1/A/1742:1746, 1/A/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
IL_7JQB_091 | 1/A/1750:1751, 1/A/1782:1784 | Major groove platform | geometric IL_3OXE_003 IL_48076.6 | |
IL_7JQB_092 | 1/A/1751:1752, 1/A/1780:1782 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7JQB_012 | No text annotation | ||
IL_7JQB_017 | No text annotation | ||
IL_7JQB_046 | Tandem non-canonical cWW pairs | ||
IL_7JQB_047 | No text annotation | ||
IL_7JQB_063 | Tandem non-canonical cWW pairs | ||
IL_7JQB_097 | No text annotation | ||
IL_7JQB_075 | Tandem non-canonical cWW pairs |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7JQB_001 | 1/A/40:41, 1/A/481:487, 1/A/512:514 | No text annotation | geometric J3_4V88_078 NA | |
J3_7JQB_014 | 1/A/40:47, 1/A/479:487, 1/A/512:514 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
J3_7JQB_002 | 1/A/682:685, 1/A/917:922, 1/A/1022:1023 | No text annotation | ||
J3_7JQB_015 | 1/A/682:685, 1/A/917:923, 1/A/1019:1023 | No text annotation | ||
J3_7JQB_003 | 1/A/816:819, 1/A/829:831, 1/A/843:848 | No text annotation | homologous J3_4V88_032 NA | |
J3_7JQB_004 | 1/A/938:941, 1/A/985:993, 1/A/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
J3_7JQB_005 | 1/A/1094:1096, 1/A/1136:1140, 1/A/1147:1151 | No text annotation | ||
J3_7JQB_006 | 1/A/1218:1221, 1/A/1645:1651, 1/A/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
J3_7JQB_007 | 1/A/1225:1228, 1/A/1530:1532, 1/A/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
J3_7JQB_008 | 1/A/1237:1244, 1/A/1255:1266, 1/A/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
J3_7JQB_009 | 1/A/1272:1277, 1/A/1320:1324, 1/A/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
J3_7JQB_017 | 1/A/1340:1345, 1/A/1384:1389, 1/A/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
J3_7JQB_011 | 1/A/1350:1351, 1/A/1360:1363, 1/A/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
J3_7JQB_012 | 1/A/1391:1395, 1/A/1450:1456, 1/A/1470:1479 | No text annotation | ||
J3_7JQB_013 | 1/A/1532:1536, 1/A/1597:1604, 1/A/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
J4_7JQB_001 | 1/A/98:106, 1/A/355:357, 1/A/405:409, 1/A/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
J4_7JQB_002 | 1/A/671:673, 1/A/1032:1037, 1/A/1078:1089, 1/A/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
J5_7JQB_001 | 1/A/30:34, 1/A/521:527, 1/A/558:563, 1/A/592:595, 1/A/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
J5_7JQB_002 | 1/A/30:34, 1/A/521:527, 1/A/558:565, 1/A/585:595, 1/A/641:644 | No text annotation | ||
J5_7JQB_003 | 1/A/53:56, 1/A/89:96, 1/A/434:436, 1/A/457:459, 1/A/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
J5_7JQB_004 | 1/A/123:130, 1/A/182:185, 1/A/214:215, 1/A/310:312, 1/A/337:341 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7JQB_016 | No text annotation | ||
J3_7JQB_010 | No text annotation |
Coloring options: