HL_7JQB_033

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

7JQB|1|A|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQB_033 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.3172

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7JQB|1|A|G|1658
7JQB|1|A|U|1659
7JQB|1|A|C|1660
7JQB|1|A|A|1661
7JQB|1|A|U|1662
7JQB|1|A|A|1663
7JQB|1|A|A|1664
7JQB|1|A|G|1665
7JQB|1|A|C|1666

Current chains

Chain A

rRNA

Nearby chains

Chain R

Uncharacterized protein

Chain U

Uncharacterized protein

Chain V

uS10