HL_7JQC_019

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQC_019 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1649

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7JQC|1|A|A|957
7JQC|1|A|G|958
7JQC|1|A|G|959
7JQC|1|A|U|960
7JQC|1|A|G|961
7JQC|1|A|A|962
7JQC|1|A|A|963
7JQC|1|A|A|964
7JQC|1|A|U|965
7JQC|1|A|U|966

Current chains

Chain A

rRNA

Nearby chains

Chain X

Uncharacterized protein