HL_7JQC_021

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQC_021 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.2059

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7JQC|1|A|G|1054
7JQC|1|A|A|1055
7JQC|1|A|U|1056
7JQC|1|A|C|1057
7JQC|1|A|A|1058
7JQC|1|A|G|1059
7JQC|1|A|A|1060
7JQC|1|A|U|1061
7JQC|1|A|A|1062
7JQC|1|A|C|1063
7JQC|1|A|C|1064

Current chains

Chain A

rRNA

Nearby chains

Chain X

Uncharacterized protein