HL_7JQC_030

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQC_030 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.3789

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7JQC|1|A|C|1565
7JQC|1|A|G|1566
7JQC|1|A|G|1567
7JQC|1|A|C|1568
7JQC|1|A|A|1569
7JQC|1|A|G|1570

Current chains

Chain A

rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain U

Uncharacterized protein