HL_7JQL_160

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7JQL|1|2A|A|2268, 7JQL|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQL_160 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0786

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7JQL|1|2A|C|2264
7JQL|1|2A|U|2265
7JQL|1|2A|A|2266
7JQL|1|2A|A|2267
7JQL|1|2A|A|2268
7JQL|1|2A|A|2269
7JQL|1|2A|G|2270
7JQL|1|2A|G|2271
7JQL|1|2A|U|2272
7JQL|1|2A|A|2273
7JQL|1|2A|A|2274
7JQL|1|2A|C|2275
7JQL|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16