HL_7JQL_222

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

G(PSU)AAC(5MU)A(PSU)AA(4OC)

Length

11 nucleotides

Bulged bases

7JQL|1|2A|A|1913

QA status

Modified nucleotides: PSU, 5MU, 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQL_222 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.4288

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

7JQL|1|2A|G|1910
7JQL|1|2A|PSU|1911
7JQL|1|2A|A|1912
7JQL|1|2A|A|1913
7JQL|1|2A|C|1914
7JQL|1|2A|5MU|1915
7JQL|1|2A|A|1916
7JQL|1|2A|PSU|1917
7JQL|1|2A|A|1918
7JQL|1|2A|A|1919
7JQL|1|2A|4OC|1920

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2v

mRNA

Chain 2x

Transfer RNA; tRNA