HL_7JSS_006

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7JSS|1|1|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_006 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1239

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7JSS|1|1|G|194
7JSS|1|1|A|195
7JSS|1|1|A|196
7JSS|1|1|A|197
7JSS|1|1|C|198
7JSS|1|1|A|199
7JSS|1|1|U|200
7JSS|1|1|C|201

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15

Chain x

50S ribosomal protein L28