3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUAACUAUAAC
Length
11 nucleotides
Bulged bases
7JSS|1|1|A|1913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSS_047 not in the Motif Atlas
Geometric match to HL_5TBW_049
Geometric discrepancy: 0.396
The information below is about HL_5TBW_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7JSS|1|1|G|1910
7JSS|1|1|U|1911
7JSS|1|1|A|1912
7JSS|1|1|A|1913
7JSS|1|1|C|1914
7JSS|1|1|U|1915
7JSS|1|1|A|1916
7JSS|1|1|U|1917
7JSS|1|1|A|1918
7JSS|1|1|A|1919
7JSS|1|1|C|1920

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain 5
Transfer RNA; tRNA
Chain 8
Peptidyl-tRNA hydrolase ArfB
Chain Q
30S ribosomal protein S12

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