3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
7JSS|1|1|A|2268, 7JSS|1|1|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSS_053 not in the Motif Atlas
Homologous match to HL_7RQB_054
Geometric discrepancy: 0.1077
The information below is about HL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.6
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
7

Unit IDs

7JSS|1|1|C|2264
7JSS|1|1|U|2265
7JSS|1|1|A|2266
7JSS|1|1|A|2267
7JSS|1|1|A|2268
7JSS|1|1|G|2269
7JSS|1|1|A|2270
7JSS|1|1|G|2271
7JSS|1|1|U|2272
7JSS|1|1|A|2273
7JSS|1|1|A|2274
7JSS|1|1|C|2275
7JSS|1|1|G|2276

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain m
50S ribosomal protein L16
Chain w
50S ribosomal protein L27

Coloring options:


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