3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UGAAGUAG
Length
8 nucleotides
Bulged bases
7JSS|1|1|G|2529
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSS_060 not in the Motif Atlas
Homologous match to HL_7RQB_061
Geometric discrepancy: 0.279
The information below is about HL_7RQB_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91104.1
Basepair signature
cWW-F
Number of instances in this motif group
12

Unit IDs

7JSS|1|1|U|2528
7JSS|1|1|G|2529
7JSS|1|1|A|2530
7JSS|1|1|A|2531
7JSS|1|1|G|2532
7JSS|1|1|U|2533
7JSS|1|1|A|2534
7JSS|1|1|G|2535

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L36
Chain f
50S ribosomal protein L6

Coloring options:


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