HL_7JSS_066

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

7JSS|1|1|U|2797, 7JSS|1|1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_066 not in the Motif Atlas

Geometric match to HL_8P9A_194

Geometric discrepancy: 0.3881

The information below is about HL_8P9A_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7JSS|1|1|C|2795
7JSS|1|1|U|2796
7JSS|1|1|U|2797
7JSS|1|1|U|2798
7JSS|1|1|A|2799
7JSS|1|1|A|2800
7JSS|1|1|G|2801

Current chains

Chain 1

23S ribosomal RNA

Nearby chains