HL_7JSS_091

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

7JSS|1|3|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_091 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.3117

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7JSS|1|3|G|963
7JSS|1|3|A|964
7JSS|1|3|U|965
7JSS|1|3|G|966
7JSS|1|3|C|967
7JSS|1|3|A|968
7JSS|1|3|A|969
7JSS|1|3|C|970
7JSS|1|3|G|971
7JSS|1|3|C|972

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain N

30S ribosomal protein S9

Chain O

30S ribosomal protein S10