HL_7JSS_094

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7JSS|1|3|A|1092, 7JSS|1|3|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.2907

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

7JSS|1|3|G|1089
7JSS|1|3|U|1090
7JSS|1|3|U|1091
7JSS|1|3|A|1092
7JSS|1|3|A|1093
7JSS|1|3|G|1094
7JSS|1|3|U|1095
7JSS|1|3|C|1096

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain L

30S ribosomal protein S7

Chain Z

30S ribosomal protein S21