3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSS_098 not in the Motif Atlas
Homologous match to HL_5J7L_028
Geometric discrepancy: 0.2737
The information below is about HL_5J7L_028
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

7JSS|1|3|C|1314
7JSS|1|3|U|1315
7JSS|1|3|G|1316
7JSS|1|3|C|1317
7JSS|1|3|A|1318
7JSS|1|3|A|1319
7JSS|1|3|C|1320
7JSS|1|3|U|1321
7JSS|1|3|C|1322
7JSS|1|3|G|1323

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain R
30S ribosomal protein S13
Chain S
30S ribosomal protein S14
Chain X
30S ribosomal protein S19

Coloring options:


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