HL_7JSS_099

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

7JSS|1|3|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_099 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.2245

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

7JSS|1|3|G|1356
7JSS|1|3|A|1357
7JSS|1|3|U|1358
7JSS|1|3|C|1359
7JSS|1|3|A|1360
7JSS|1|3|G|1361
7JSS|1|3|A|1362
7JSS|1|3|A|1363
7JSS|1|3|U|1364
7JSS|1|3|G|1365
7JSS|1|3|C|1366

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S9

Chain O

30S ribosomal protein S10

Chain S

30S ribosomal protein S14