3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAAACAUC
Length
8 nucleotides
Bulged bases
7JSW|1|1|A|196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSW_006 not in the Motif Atlas
Geometric match to HL_4WF9_006
Geometric discrepancy: 0.1171
The information below is about HL_4WF9_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_30068.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

7JSW|1|1|G|194
7JSW|1|1|A|195
7JSW|1|1|A|196
7JSW|1|1|A|197
7JSW|1|1|C|198
7JSW|1|1|A|199
7JSW|1|1|U|200
7JSW|1|1|C|201

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain l
50S ribosomal protein L15
Chain x
50S ribosomal protein L28

Coloring options:


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