Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7JSW_0011/1/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_93438.2
HL_7JSW_0021/1/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_7JSW_0031/1/123:128No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_7JSW_0041/1/137:142No text annotation
HL_7JSW_0051/1/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_7JSW_0061/1/194:201No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_7JSW_0071/1/225:230No text annotation
homologous
HL_7A0S_007
HL_53890.2
HL_7JSW_0081/1/246:252No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_7JSW_0091/1/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_7JSW_0101/1/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_7JSW_0111/1/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_7JSW_0121/1/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_7JSW_0131/1/462:467GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_7JSW_0141/1/487:493GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_7JSW_1121/1/545:548No text annotation
HL_7JSW_0161/1/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.6
HL_7JSW_0171/1/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_7JSW_0181/1/629:634GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_7JSW_1051/1/641:647GNRA
homologous
HL_4WF9_021
HL_37824.7
HL_7JSW_0201/1/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_7JSW_0211/1/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_7JSW_0221/1/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_7JSW_0231/1/826:831No text annotation
homologous
HL_4WF9_025
HL_55195.3
HL_7JSW_0241/1/884:892No text annotation
HL_7JSW_0251/1/955:962GNRA
homologous
HL_7A0S_026
HL_37824.7
HL_7JSW_0261/1/978:985No text annotation
homologous
HL_4WF9_028
HL_42998.2
HL_7JSW_1131/1/1059:1079No text annotation
HL_7JSW_0271/1/1064:1074No text annotation
HL_7JSW_1071/1/1092:1099No text annotation
homologous
HL_9DFE_028
NA
HL_7JSW_0291/1/1171:1178No text annotation
HL_7JSW_0301/1/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.7
HL_7JSW_0311/1/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.6
HL_7JSW_0321/1/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_7JSW_0331/1/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_7JSW_0341/1/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_7JSW_0351/1/1450:1461No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_7JSW_0361/1/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_7JSW_0371/1/1533:1538No text annotation
geometric
HL_4V88_198
NA
HL_7JSW_0381/1/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_7JSW_0391/1/1612:1619No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_7JSW_1081/1/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_7JSW_0411/1/1691:1696UNCG
geometric
HL_4V9F_044
HL_34617.5
HL_7JSW_0421/1/1727:1733UNCG variation
geometric
HL_1P6V_001
HL_53890.2
HL_7JSW_0431/1/1752:1756No text annotation
homologous
HL_4WF9_042
HL_80709.3
HL_7JSW_0441/1/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_7JSW_0451/1/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_7JSW_0461/1/1868:1873No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_7JSW_0471/1/1910:1920No text annotation
homologous
HL_9DFE_046
HL_25847.2
HL_7JSW_0481/1/1949:1957No text annotation
homologous
HL_4WF9_046
HL_20167.2
HL_7JSW_0491/1/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.2
HL_7JSW_0501/1/2102:2187No text annotation
HL_7JSW_0511/1/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_7JSW_0521/1/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_7JSW_0531/1/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_7JSW_0541/1/2303:2313No text annotation
homologous
HL_5J7L_188
NA
HL_7JSW_0551/1/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_7JSW_0561/1/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.7
HL_7JSW_0571/1/2374:2379GNRA
homologous
HL_4WF9_054
HL_37824.7
HL_7JSW_0581/1/2404:2413No text annotation
homologous
HL_7A0S_058
HL_53454.2
HL_7JSW_1091/1/2471:2479No text annotation
homologous
HL_9DFE_058
HL_32735.2
HL_7JSW_0601/1/2528:2535No text annotation
homologous
HL_5J7L_194
HL_31585.3
HL_7JSW_0611/1/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_7JSW_0621/1/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_7JSW_0631/1/2658:2663GNRA
geometric
HL_4Y1M_002
HL_37824.7
HL_7JSW_0641/1/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_7JSW_0651/1/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_7JSW_0661/1/2795:2801Other HL
homologous
HL_5J7L_200
HL_08100.1
HL_7JSW_0671/1/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_7JSW_0681/1/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.7
HL_7JSW_0691/2/38:44No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_7JSW_0701/2/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_7JSW_0711/3/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_7JSW_0721/3/78:91No text annotation
HL_7JSW_1101/3/157:164GNRA with near cWW
homologous
HL_6CZR_215
NA
HL_7JSW_0741/3/186:191GNRA
homologous
HL_5J7L_004
HL_37824.7
HL_7JSW_1141/3/207:212No text annotation
HL_7JSW_0761/3/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_7JSW_0771/3/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_7JSW_0781/3/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_7JSW_0791/3/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_7JSW_0801/3/379:384GNRA
homologous
HL_5J7L_010
HL_37824.7
HL_7JSW_0811/3/419:424No text annotation
homologous
HL_6CZR_082
NA
HL_7JSW_0821/3/462:470No text annotation
HL_7JSW_0831/3/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_7JSW_0841/3/617:623No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_7JSW_0851/3/689:698No text annotation
homologous
HL_5J7L_015
HL_75293.5
HL_7JSW_0861/3/726:731GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_7JSW_0871/3/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_7JSW_0881/3/840:846No text annotation
geometric
HL_4KR9_003
HL_70782.2
HL_7JSW_0891/3/862:867GNRA
homologous
HL_5J7L_019
HL_37824.7
HL_7JSW_0901/3/897:902GNRA
homologous
HL_5J7L_020
HL_37824.7
HL_7JSW_0911/3/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_7JSW_0921/3/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_7JSW_0931/3/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.7
HL_7JSW_0941/3/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_7JSW_0951/3/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_7JSW_1111/3/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_7JSW_0971/3/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_7JSW_0981/3/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_7JSW_0991/3/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_7JSW_1001/3/1449:1454No text annotation
HL_7JSW_1011/3/1515:1520GNRA
geometric
HL_7A0S_031
HL_37824.7
HL_7JSW_1021/5/13:22No text annotation
homologous
HL_6UFM_001
HL_04642.1
HL_7JSW_1031/5/31:39tRNA anticodon loop
homologous
HL_4TUE_034
HL_06059.5
HL_7JSW_1041/5/53:61T-loop with 2 stacked bulged bases
homologous
HL_3WQY_003
HL_28252.6

Problematic loops

#loop idProblemSequence
HL_7JSW_015No text annotation
HL_7JSW_019GNRA related
HL_7JSW_106No text annotation
HL_7JSW_028No text annotation
HL_7JSW_040GNRA with extra cWW
HL_7JSW_059No text annotation
HL_7JSW_073No text annotation
HL_7JSW_075No text annotation
HL_7JSW_096tRNA anticodon loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7JSW_0011/1/24:30,
1/1/510:516
Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_04021.2
IL_7JSW_0021/1/36:37,
1/1/442:444
Single bulged A
homologous
IL_7RQB_002
NA
IL_7JSW_0031/1/43:44,
1/1/434:436
Minor groove platform
homologous
IL_7RQB_003
NA
IL_7JSW_0041/1/81:85,
1/1/97:105
No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_7JSW_0051/1/183:184,
1/1/212:214
Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_7JSW_0061/1/188:194,
1/1/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
IL_04346.10
IL_7JSW_0071/1/239:245,
1/1/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_7JSW_0081/1/269:271,
1/1/366:370
No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_7JSW_0091/1/274:282,
1/1/358:363
No text annotation
IL_7JSW_0101/1/293:295,
1/1/343:347
No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_7JSW_0111/1/481:484,
1/1/496:509
No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_7JSW_0121/1/536:539,
1/1/554:557
Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_7JSW_0131/1/564:566,
1/1/575:577
Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_7JSW_0141/1/606:610,
1/1/618:622
AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_7JSW_0151/1/672:674,
1/1/806:808
Isolated non-canonical cWW pair
homologous
IL_5J7L_259
IL_87907.2
IL_7JSW_0161/1/674:678,
1/1/799:806
tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_7JSW_0171/1/697:698,
1/1/763:765
Single bulged A
geometric
IL_5J7L_261
IL_31462.5
IL_7JSW_0181/1/702:703,
1/1/728:730
Single bulged G
homologous
IL_7A0S_017
IL_00225.13
IL_7JSW_0191/1/703:707,
1/1/724:728
Triple sheared
geometric
IL_7RQB_021
NA
IL_7JSW_0201/1/738:740,
1/1/757:758
Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_7JSW_0211/1/775:777,
1/1/787:791
Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_7JSW_0221/1/837:838,
1/1/940:942
Single stack bend
homologous
IL_7RQB_024
NA
IL_7JSW_0231/1/843:847,
1/1/933:935
No text annotation
IL_7JSW_1781/1/843:848,
1/1/930:935
No text annotation
IL_7JSW_0241/1/847:848,
1/1/930:933
Stack outside cWW
homologous
IL_5J7L_268
IL_56987.1
IL_7JSW_0251/1/850:851,
1/1/926:928
Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_7JSW_0261/1/856:862,
1/1/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_7JSW_0271/1/862:863,
1/1/913:915
Single bulged G
geometric
IL_5J7L_271
IL_00225.13
IL_7JSW_0281/1/864:868,
1/1/909:912
C-loop
homologous
IL_5J7L_272
IL_26222.2
IL_7JSW_0291/1/870:872,
1/1/905:907
Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_7JSW_0301/1/875:879,
1/1/898:902
No text annotation
IL_7JSW_1941/1/875:882,
1/1/894:902
No text annotation
IL_7JSW_0311/1/879:883,
1/1/893:898
No text annotation
geometric
IL_4P3T_002
NA
IL_7JSW_0321/1/994:996,
1/1/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA
IL_7JSW_0331/1/998:1002,
1/1/1153:1157
UAA/GAN
homologous
IL_5J7L_277
IL_38507.2
IL_7JSW_0341/1/1004:1011,
1/1/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_7JSW_0351/1/1011:1013,
1/1/1149:1150
Single bulged U
homologous
IL_7RQB_038
NA
IL_7JSW_0361/1/1018:1024,
1/1/1140:1144
Kink-turn related
geometric
IL_5J7L_280
IL_57188.5
IL_7JSW_0371/1/1024:1030,
1/1/1124:1140
No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_7JSW_0381/1/1031:1034,
1/1/1121:1123
Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_57744.1
IL_7JSW_0391/1/1038:1041,
1/1/1114:1117
Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_7JSW_0401/1/1042:1051,
1/1/1108:1113
No text annotation
IL_7JSW_0411/1/1059:1064,
1/1/1074:1079
No text annotation
IL_7JSW_0421/1/1087:1091,
1/1/1100:1102
No text annotation
homologous
IL_9DFE_043
NA
IL_7JSW_0431/1/1196:1198,
1/1/1247:1250
Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_7JSW_0441/1/1202:1206,
1/1/1240:1243
No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_7JSW_0451/1/1208:1215,
1/1/1234:1238
Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_7JSW_0461/1/1262:1269,
1/1/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_7JSW_0471/1/1310:1313,
1/1/1603:1604
Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_50694.7
IL_7JSW_0481/1/1319:1323,
1/1/1331:1333
C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_7JSW_0491/1/1351:1355,
1/1/1376:1380
UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_7JSW_0501/1/1357:1361,
1/1/1370:1374
tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_7JSW_0511/1/1415:1416,
1/1/1582:1587
No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_7JSW_0521/1/1417:1421,
1/1/1577:1581
UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_7JSW_0531/1/1432:1435,
1/1/1557:1561
Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_7JSW_0541/1/1437:1440,
1/1/1551:1555
tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_7JSW_0551/1/1468:1471,
1/1/1520:1524
No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_7JSW_0561/1/1474:1479,
1/1/1512:1517
No text annotation
IL_7JSW_1951/1/1481:1482,
1/1/1507:1510
No text annotation
IL_7JSW_1961/1/1489:1491,
1/1/1499:1500
No text annotation
IL_7JSW_0591/1/1526:1529,
1/1/1542:1546
UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_7JSW_0601/1/1651:1656,
1/1/2004:2006
No text annotation
homologous
IL_7RQB_064
NA
IL_7JSW_0611/1/1663:1665,
1/1/1995:1997
Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_7JSW_0621/1/1666:1669,
1/1/1993:1994
Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_50694.7
IL_7JSW_1811/1/1666:1674,
1/1/1990:1994
No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_7JSW_0631/1/1669:1674,
1/1/1990:1993
Intercalated tWH
geometric
IL_4WF9_065
IL_76758.2
IL_7JSW_0641/1/1686:1691,
1/1/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
IL_47346.2
IL_7JSW_0651/1/1712:1719,
1/1/1741:1746
No text annotation
IL_7JSW_1821/1/1720:1724,
1/1/1736:1740
Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_7JSW_0671/1/1770:1771,
1/1/1980:1982
Single bulged A
homologous
IL_4WF9_068
IL_31462.5
IL_7JSW_0681/1/1798:1804,
1/1/1813:1821
Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_7JSW_0691/1/1837:1840,
1/1/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_95583.2
IL_7JSW_0701/1/1841:1842,
1/1/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_7JSW_1831/1/1846:1849,
1/1/1893:1894
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_7JSW_1841/1/1851:1860,
1/1/1882:1891
No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_7JSW_0721/1/1864:1867,
1/1/1874:1878
UAA/GAN
homologous
IL_4WF9_075
IL_77691.5
IL_7JSW_0731/1/1933:1934,
1/1/1964:1967
Bulged stacked bases
homologous
IL_4WF9_076
IL_22551.3
IL_7JSW_0741/1/1934:1945,
1/1/1961:1964
No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_7JSW_0751/1/2050:2052,
1/1/2617:2618
Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_7JSW_0761/1/2054:2056,
1/1/2612:2615
No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_7JSW_0771/1/2067:2069,
1/1/2442:2443
Single bulged U
homologous
IL_7RQB_080
NA
IL_7JSW_0781/1/2070:2071,
1/1/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA
IL_7JSW_0791/1/2081:2083,
1/1/2236:2239
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_7JSW_0801/1/2085:2087,
1/1/2232:2234
Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_7JSW_0811/1/2202:2204,
1/1/2220:2221
Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_7JSW_0821/1/2350:2353,
1/1/2364:2367
Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_7JSW_0831/1/2401:2403,
1/1/2414:2415
No text annotation
IL_7JSW_0841/1/2453:2454,
1/1/2498:2500
Single stack bend
homologous
IL_4WF9_089
IL_26793.1
IL_7JSW_0851/1/2454:2455,
1/1/2496:2498
Major groove platform
geometric
IL_4WF9_090
IL_48076.6
IL_7JSW_0861/1/2457:2459,
1/1/2493:2494
Major groove platform
homologous
IL_7A0S_085
IL_48076.6
IL_7JSW_0871/1/2459:2461,
1/1/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA
IL_7JSW_0881/1/2466:2470,
1/1/2480:2484
Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_7JSW_0891/1/2507:2508,
1/1/2580:2582
Major groove platform
homologous
IL_7RQB_096
NA
IL_7JSW_0901/1/2510:2512,
1/1/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
IL_07785.1
IL_7JSW_0911/1/2512:2513,
1/1/2571:2574
No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_7JSW_1861/1/2522:2523,
1/1/2540:2543
Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_7JSW_0931/1/2591:2592,
1/1/2601:2603
Single bulged A
homologous
IL_5J7L_344
IL_31462.5
IL_7JSW_0941/1/2636:2640,
1/1/2774:2782
tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_7JSW_0951/1/2652:2658,
1/1/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_5J7L_346
IL_16458.4
IL_7JSW_0961/1/2680:2684,
1/1/2725:2727
C-loop
homologous
IL_7A0S_095
IL_63596.11
IL_7JSW_0971/1/2687:2691,
1/1/2718:2722
No text annotation
homologous
IL_5J7L_348
IL_23774.1
IL_7JSW_0981/1/2695:2696,
1/1/2711:2714
Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_7JSW_0991/1/2737:2742,
1/1/2762:2767
UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_7JSW_1001/1/2806:2811,
1/1/2889:2892
No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_7JSW_1011/1/2838:2839,
1/1/2878:2880
Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_7JSW_1021/1/2843:2846,
1/1/2870:2874
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_7JSW_1031/1/2847:2852,
1/1/2865:2869
tHS double platform
homologous
IL_7RQB_110
NA
IL_7JSW_1041/2/17:18,
1/2/65:67
Major groove intercalation
homologous
IL_5J7L_355
IL_31462.5
IL_7JSW_1051/2/23:28,
1/2/56:60
No text annotation
homologous
IL_7A0S_103
IL_18472.4
IL_7JSW_1061/2/30:31,
1/2/51:54
Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_7JSW_1071/2/34:38,
1/2/44:48
Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_7JSW_1081/2/71:79,
1/2/97:105
Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_7JSW_1871/3/30:32,
1/3/552:553
Single bulged G
homologous
IL_5J7L_001
IL_00225.13
IL_7JSW_1101/3/44:45,
1/3/396:398
Single bulged A
homologous
IL_5J7L_002
IL_31462.5
IL_7JSW_1111/3/47:52,
1/3/359:361
No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_7JSW_1121/3/54:56,
1/3/356:357
Minor groove platform
homologous
IL_5J7L_004
IL_51454.2
IL_7JSW_1131/3/63:66,
1/3/103:104
Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_7JSW_1881/3/67:69,
1/3/99:102
Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_7JSW_1891/3/70:73,
1/3/97:98
Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_7JSW_1161/3/75:78,
1/3/91:95
No text annotation
IL_7JSW_1171/3/128:131,
1/3/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_7JSW_1181/3/132:136,
1/3/227:230
No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_7JSW_1191/3/144:146,
1/3/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.5
IL_7JSW_1201/3/147:153,
1/3/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_7JSW_1211/3/203:206,
1/3/213:214
No text annotation
IL_7JSW_1221/3/242:247,
1/3/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_7JSW_1911/3/249:252,
1/3/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_7JSW_1241/3/292:293,
1/3/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_7JSW_1251/3/367:369,
1/3/392:393
Single bulged U
geometric
IL_5J7L_017
IL_89505.4
IL_7JSW_1261/3/371:375,
1/3/389:390
C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_7JSW_1271/3/375:376,
1/3/387:389
Single bulged G
homologous
IL_5J7L_019
IL_00225.13
IL_7JSW_1281/3/409:416,
1/3/427:433
No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_7JSW_1291/3/440:442,
1/3/492:497
No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_7JSW_1301/3/446:450,
1/3/483:488
tSH-tHW-tWW
homologous
IL_5J7L_022
IL_88269.4
IL_7JSW_1921/3/446:455,
1/3/477:488
No text annotation
IL_7JSW_1311/3/450:455,
1/3/477:483
No text annotation
geometric
IL_5J7L_023
IL_70801.1
IL_7JSW_1321/3/457:459,
1/3/473:475
Isolated cWS basepair
geometric
IL_7RQB_030
NA
IL_7JSW_1331/3/504:511,
1/3/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_7JSW_1341/3/515:521,
1/3/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_7JSW_1351/3/569:575,
1/3/880:881
No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_7JSW_1361/3/580:584,
1/3/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_7JSW_1371/3/594:596,
1/3/644:645
Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_7JSW_1381/3/597:598,
1/3/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_7JSW_1391/3/605:612,
1/3/628:633
No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_7JSW_1401/3/654:655,
1/3/751:754
Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_7JSW_1411/3/659:660,
1/3/745:747
Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_7JSW_1971/3/662:666,
1/3/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_7JSW_1931/3/673:677,
1/3/713:717
Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_7JSW_1441/3/684:688,
1/3/699:706
Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_7JSW_1451/3/774:778,
1/3/804:805
Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_7JSW_1461/3/779:783,
1/3/799:803
tSH-tHW-tHS
homologous
IL_5J7L_037
IL_17136.7
IL_7JSW_1471/3/887:894,
1/3/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_7JSW_1481/3/922:923,
1/3/1393:1395
Single bulged A
homologous
IL_6CZR_147
NA
IL_7JSW_1491/3/925:927,
1/3/1390:1391
Single bulged G
homologous
IL_5J7L_040
IL_00225.13
IL_7JSW_1981/3/933:935,
1/3/1380:1384
No text annotation
homologous
IL_6CZR_410
NA
IL_7JSW_1511/3/953:954,
1/3/1226:1228
No text annotation
homologous
IL_6CZR_150
NA
IL_7JSW_1521/3/993:998,
1/3/1043:1045
No text annotation
IL_7JSW_1531/3/998:999,
1/3/1041:1043
Single stack bend
geometric
IL_7KGA_003
IL_90729.1
IL_7JSW_1541/3/1003:1006,
1/3/1023:1037
No text annotation
IL_7JSW_1551/3/1048:1050,
1/3/1208:1209
No text annotation
homologous
IL_6CZR_152
NA
IL_7JSW_1561/3/1052:1056,
1/3/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_7JSW_1571/3/1057:1058,
1/3/1199:1203
Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_7JSW_1581/3/1060:1061,
1/3/1195:1197
Single bulged U
homologous
IL_4LFB_046
IL_89505.4
IL_7JSW_1591/3/1061:1063,
1/3/1193:1195
Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_7JSW_1601/3/1124:1128,
1/3/1144:1149
No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_7JSW_1611/3/1129:1132,
1/3/1142:1143
Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_7JSW_1621/3/1158:1161,
1/3/1175:1181
No text annotation
homologous
IL_5J7L_053
IL_42032.1
IL_7JSW_1631/3/1247:1253,
1/3/1284:1290
No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_7JSW_1641/3/1255:1258,
1/3/1277:1282
180 degree turn
homologous
IL_4LFB_052
IL_11344.2
IL_7JSW_1651/3/1259:1264,
1/3/1271:1276
No text annotation
IL_7JSW_1661/3/1303:1308,
1/3/1329:1334
No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_7JSW_1671/3/1399:1401,
1/3/1501:1504
No text annotation
homologous
IL_5J7L_058
IL_61438.4
IL_7JSW_1681/3/1401:1404,
1/3/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_7JSW_1691/3/1405:1407,
1/3/1494:1496
Isolated non-canonical cWW pair
geometric
IL_5MWI_004
IL_87907.2
IL_7JSW_1701/3/1407:1409,
1/3/1491:1494
No text annotation
geometric
IL_6DME_003
IL_55516.2
IL_7JSW_1711/3/1409:1411,
1/3/1489:1491
Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_7JSW_1721/3/1412:1414,
1/3/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_7JSW_1731/3/1416:1419,
1/3/1481:1484
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_7JSW_1741/3/1430:1435,
1/3/1466:1470
Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_7JSW_1751/3/1440:1442,
1/3/1460:1461
Single bulged A
homologous
IL_5J7L_064
IL_31462.5
IL_7JSW_1761/3/1444:1448,
1/3/1455:1458
No text annotation

Problematic loops

#loop idProblemSequence
IL_7JSW_179No text annotation
IL_7JSW_180No text annotation
IL_7JSW_057No text annotation
IL_7JSW_058Isolated non-canonical cWW pair
IL_7JSW_066No text annotation
IL_7JSW_071No text annotation
IL_7JSW_185No text annotation
IL_7JSW_092No text annotation
IL_7JSW_109Isolated non-canonical cWW pair
IL_7JSW_114No text annotation
IL_7JSW_115No text annotation
IL_7JSW_190No text annotation
IL_7JSW_123No text annotation
IL_7JSW_142Partly complementary
IL_7JSW_143No text annotation
IL_7JSW_150No text annotation
IL_7JSW_177No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7JSW_0011/1/30:31,
1/1/474:481,
1/1/509:510
No text annotation
homologous
J3_5J7L_036
J3_60031.2
J3_7JSW_0271/1/30:31,
1/1/474:484,
1/1/496:510
No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_7JSW_0281/1/32:35,
1/1/445:461,
1/1/468:473
No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_7JSW_0021/1/56:57,
1/1/70:76,
1/1/110:114
No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_7JSW_0291/1/297:301,
1/1/316:325,
1/1/337:341
No text annotation
homologous
J3_5J7L_068
J3_46299.2
J3_7JSW_0031/1/683:689,
1/1/773:775,
1/1/791:794
No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_7JSW_0041/1/698:700,
1/1/732:736,
1/1/760:763
No text annotation
homologous
J3_4WF9_003
J3_44724.7
J3_7JSW_0421/1/1055:1057,
1/1/1081:1087,
1/1/1102:1104
No text annotation
homologous
J3_5J7L_040
J3_28621.5
J3_7JSW_0061/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642
No text annotation
homologous
J3_7A0S_006
J3_32852.6
J3_7JSW_0071/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622
No text annotation
homologous
J3_7A0S_007
J3_71677.1
J3_7JSW_0081/1/1344:1349,
1/1/1382:1385,
1/1/1402:1403
No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_7JSW_0311/1/1424:1429,
1/1/1564:1565,
1/1/1568:1574
No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_7JSW_0091/1/2091:2093,
1/1/2196:2200,
1/1/2223:2228
Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_7JSW_0321/1/2282:2284,
1/1/2384:2395,
1/1/2421:2427
No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_7JSW_0101/1/2295:2299,
1/1/2317:2323,
1/1/2332:2337
No text annotation
J3_7JSW_0111/1/2517:2520,
1/1/2545:2547,
1/1/2561:2567
No text annotation
homologous
J3_4WF9_009
J3_32601.5
J3_7JSW_0121/1/2789:2792,
1/1/2804:2806,
1/1/2892:2894
No text annotation
J3_7JSW_0131/1/2812:2815,
1/1/2831:2836,
1/1/2882:2888
No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_7JSW_0141/2/10:16,
1/2/68:70,
1/2/106:110
No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_7JSW_0151/3/46:47,
1/3/361:367,
1/3/393:395
No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_7JSW_0331/3/46:52,
1/3/359:367,
1/3/393:395
No text annotation
homologous
J3_5J7L_050
J3_46317.4
J3_7JSW_0161/3/586:588,
1/3/651:654,
1/3/754:755
No text annotation
geometric
J3_5J7L_002
J3_56052.5
J3_7JSW_0431/3/586:588,
1/3/651:655,
1/3/751:755
No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_7JSW_0171/3/672:673,
1/3/717:725,
1/3/732:734
No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_7JSW_0181/3/826:829,
1/3/857:861,
1/3/868:874
No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_7JSW_0361/3/936:939,
1/3/1344:1350,
1/3/1372:1379
No text annotation
homologous
J3_5J7L_052
J3_25303.4
J3_7JSW_0201/3/943:946,
1/3/1235:1237,
1/3/1337:1340
No text annotation
homologous
J3_5J7L_005
J3_52655.4
J3_7JSW_0371/3/955:962,
1/3/973:984,
1/3/1221:1225
No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_7JSW_0221/3/990:993,
1/3/1045:1047,
1/3/1210:1215
No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_7JSW_0381/3/990:997,
1/3/1044:1047,
1/3/1210:1215
No text annotation
homologous
J3_4LFB_016
J3_76475.2
J3_7JSW_0231/3/1063:1068,
1/3/1107:1113,
1/3/1187:1193
No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_7JSW_0241/3/1073:1074,
1/3/1083:1087,
1/3/1098:1102
No text annotation
homologous
J3_6CZR_024
NA
J3_7JSW_0391/3/1116:1118,
1/3/1155:1158,
1/3/1181:1184
No text annotation
geometric
J3_5J7L_010
J3_82365.4
J3_7JSW_0401/3/1116:1118,
1/3/1155:1161,
1/3/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_7JSW_0261/3/1237:1241,
1/3/1296:1303,
1/3/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_37047.6
J3_7JSW_0411/3/1237:1241,
1/3/1296:1308,
1/3/1329:1337
No text annotation
J4_7JSW_0011/1/268:269,
1/1/370:375,
1/1/399:406,
1/1/421:424
No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_7JSW_0021/1/601:604,
1/1/624:628,
1/1/635:638,
1/1/650:656
No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_7JSW_0031/1/1270:1276,
1/1/1294:1295,
1/1/1645:1648,
1/1/2009:2010
No text annotation
homologous
J4_7A0S_004
J4_64571.5
J4_7JSW_0041/1/1310:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1604
No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_7JSW_0051/1/1313:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1603
No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_7JSW_0061/1/1444:1445,
1/1/1466:1467,
1/1/1525:1529,
1/1/1542:1547
No text annotation
homologous
J4_7A0S_007
J4_91813.1
J4_7JSW_0071/1/1772:1776,
1/1/1788:1792,
1/1/1827:1830,
1/1/1975:1979
No text annotation
homologous
J4_7A0S_008
J4_61477.5
J4_7JSW_0081/1/1833:1835,
1/1/1905:1906,
1/1/1924:1933,
1/1/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_7JSW_0091/1/2285:2289,
1/1/2343:2347,
1/1/2370:2372,
1/1/2381:2383
No text annotation
homologous
J4_9DFE_009
J4_04930.6
J4_7JSW_0101/1/2643:2646,
1/1/2674:2676,
1/1/2731:2735,
1/1/2769:2771
No text annotation
homologous
J4_5J7L_028
J4_77044.4
J4_7JSW_0111/3/115:122,
1/3/239:240,
1/3/286:289,
1/3/311:312
No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_7JSW_0121/3/142:144,
1/3/178:184,
1/3/193:198,
1/3/219:221
No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_7JSW_0131/3/575:577,
1/3/764:769,
1/3/810:821,
1/3/879:880
No text annotation
homologous
J4_5J7L_003
J4_61885.6
J4_7JSW_0141/5/7:10,
1/5/25:27,
1/5/43:49,
1/5/65:66
tRNA junction
homologous
J4_1IL2_001
J4_70449.27
J5_7JSW_0011/1/47:54,
1/1/116:121,
1/1/130:131,
1/1/148:150,
1/1/176:178
No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_7JSW_0021/1/531:533,
1/1/560:564,
1/1/577:579,
1/1/1261:1262,
1/1/2017:2018
No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_7JSW_0031/1/584:589,
1/1/668:671,
1/1/809:812,
1/1/1195:1196,
1/1/1250:1256
No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_7JSW_0041/1/1674:1682,
1/1/1706:1707,
1/1/1751:1752,
1/1/1756:1764,
1/1/1988:1990
No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_7JSW_0051/1/2057:2064,
1/1/2446:2453,
1/1/2500:2507,
1/1/2582:2588,
1/1/2606:2611
No text annotation
J5_7JSW_0061/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2282,
1/1/2427:2435
No text annotation
homologous
J5_4WF9_007
J5_39529.1
J5_7JSW_0071/3/36:39,
1/3/403:406,
1/3/436:440,
1/3/497:500,
1/3/545:548
No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_7JSW_0081/3/36:39,
1/3/403:406,
1/3/436:442,
1/3/492:500,
1/3/545:548
No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_7JSW_0091/3/58:61,
1/3/106:113,
1/3/314:316,
1/3/337:339,
1/3/350:354
No text annotation
homologous
J5_5J7L_003
J5_59910.6
J6_7JSW_0011/1/45:46,
1/1/179:183,
1/1/214:224,
1/1/231:235,
1/1/262:266,
1/1/426:433
No text annotation
J6_7JSW_0021/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2284,
1/1/2384:2395,
1/1/2421:2435
No text annotation
J7_7JSW_0011/1/8:15,
1/1/525:531,
1/1/2018:2023,
1/1/2040:2043,
1/1/2625:2630,
1/1/2788:2789,
1/1/2894:2895
No text annotation
J7_7JSW_0021/1/817:822,
1/1/835:837,
1/1/942:946,
1/1/971:976,
1/1/987:991,
1/1/1163:1164,
1/1/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_7JSW_005No text annotation
J3_7JSW_030No text annotation
J3_7JSW_034No text annotation
J3_7JSW_035No text annotation
J3_7JSW_019No text annotation
J3_7JSW_021No text annotation
J3_7JSW_025No text annotation

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