HL_7JSW_009

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7JSW|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1007

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7JSW|1|1|C|305
7JSW|1|1|U|306
7JSW|1|1|G|307
7JSW|1|1|G|308
7JSW|1|1|A|309
7JSW|1|1|A|310
7JSW|1|1|A|311
7JSW|1|1|G|312

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain u

50S ribosomal protein L24