HL_7JSW_012

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7JSW|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_012 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1483

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

7JSW|1|1|G|410
7JSW|1|1|G|411
7JSW|1|1|A|412
7JSW|1|1|C|413
7JSW|1|1|C|414
7JSW|1|1|A|415
7JSW|1|1|U|416
7JSW|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains