3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUUAACUGG
Length
9 nucleotides
Bulged bases
7JSW|1|1|U|646
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSW_019 not in the Motif Atlas
Geometric match to HL_5J7L_012
Geometric discrepancy: 0.2894
The information below is about HL_5J7L_012
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

7JSW|1|1|C|640
7JSW|1|1|U|641
7JSW|1|1|U|642
7JSW|1|1|A|643
7JSW|1|1|A|644
7JSW|1|1|C|645
7JSW|1|1|U|646
7JSW|1|1|G|647
7JSW|1|1|G|648

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L33
Chain E
50S ribosomal protein L35

Coloring options:


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