HL_7JSW_025

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

7JSW|1|1|U|958, 7JSW|1|1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1685

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7JSW|1|1|U|955
7JSW|1|1|G|956
7JSW|1|1|C|957
7JSW|1|1|U|958
7JSW|1|1|A|959
7JSW|1|1|A|960
7JSW|1|1|C|961
7JSW|1|1|G|962

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16