3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAAACAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSW_026 not in the Motif Atlas
Homologous match to HL_4WF9_028
Geometric discrepancy: 0.2108
The information below is about HL_4WF9_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_42998.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

7JSW|1|1|G|978
7JSW|1|1|A|979
7JSW|1|1|A|980
7JSW|1|1|A|981
7JSW|1|1|C|982
7JSW|1|1|A|983
7JSW|1|1|A|984
7JSW|1|1|C|985

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21

Coloring options:


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