HL_7JSW_042

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

7JSW|1|1|C|1730, 7JSW|1|1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_042 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3989

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7JSW|1|1|C|1727
7JSW|1|1|C|1728
7JSW|1|1|U|1729
7JSW|1|1|C|1730
7JSW|1|1|G|1731
7JSW|1|1|C|1732
7JSW|1|1|G|1733

Current chains

Chain 1

23S ribosomal RNA

Nearby chains