3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGCCAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSW_064 not in the Motif Atlas
Homologous match to HL_5J7L_198
Geometric discrepancy: 0.1719
The information below is about HL_5J7L_198
Detailed Annotation
Ribsomal LSU H95
Broad Annotation
Ribsomal LSU H95
Motif group
HL_65794.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
14

Unit IDs

7JSW|1|1|U|2701
7JSW|1|1|G|2702
7JSW|1|1|C|2703
7JSW|1|1|C|2704
7JSW|1|1|A|2705
7JSW|1|1|A|2706

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain n
50S ribosomal protein L17

Coloring options:


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