HL_7JSW_088

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7JSW|1|3|U|842, 7JSW|1|3|G|844, 7JSW|1|3|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_088 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3923

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7JSW|1|3|C|840
7JSW|1|3|C|841
7JSW|1|3|U|842
7JSW|1|3|U|843
7JSW|1|3|G|844
7JSW|1|3|A|845
7JSW|1|3|G|846

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain W

30S ribosomal protein S18